Non-Coding RNA Search

Ss1.1-Pig4-TMW8046B11.5

Sequence:


               
               CCCCACTGCCGTCCCCTCCTGAAATGATGCCCACCTCTCCCCAGAGCCCCCGGGATGCTG
AGCTCATTGCTGAGGCCAAGCTACTGCGTCAACACAAAGGCCGCCTGGAAGCCAGGATGC
AAATCCTGGAAGACCACAATAAACAGCTGGAGTCCCAGTTACATAGGCTAAGGCAGCTGC
TGGAGCAACCCCAGGCAGAGGCCAAGGTGAATGGTACTACAGTGTCCTCTCCTTCTACCT
CTCTTCAGAGGTCAGACAGCAGTCAGCCTATGCTGCTCCGGGTGGTTGGCAGTCAAACTT
CAGAATCCATGGGCGAGGAAGATCTTCTCAGTCCTCCCCAGGACACAAACACAGGATTAG
AGGAAGTGATGGAGCAACTCAACAACTCTTTCCCGAGCTCAAGAGGACACAATGTAGGAA
GCCTTTTCCACTTGGCAGATGATTTGGGCAGAGCGATGGAGTCCTTAGTTTCAGTCATGA
CAGATGAAGAAGGGGCAGAATAAATGTTTTACAACTCCTGATTCCCGCATGGTTTTTATA
ATATTCATACAACAAAGAGGATTAGACAGTAAGAGTTTACAAGAAAAAAATCTATATTTT
TGTGAAGGGTAGTGGTACTATACTGTAGATTTCAGTAGTTTCTAAGTCTGTTATTGTTTT
GTTAACAATGGCAGGTTTTACACGTCTATGCAATTGTACAAAAAAGTTATAAGAAAACTA
CATGTAAAATCTTGTTAGCTAAATAACTTGCCATTTCTTTATATGGAACGCATTTTGGGT
TGTTTAAAAATTTATAACAGTTATAAAGAAAGATTGTAAACTAAAGTGTGCTTTATAAAA
AAAAAAGTTGTTTATAAAAACCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCACTGCCGTCCCCTCCTGAAATGATGCCCACCTCTCCCCAGAGCCCCCGGGATGCTG
AGCTCATTGCTGAGGCCAAGCTACTGCGTCAACACAAAGGCCGCCTGGAAGCCAGGATGC
AAATCCTGGAAGACCACAATAAACAGCTGGAGTCCCAGTTACATAGGCTAAGGCAGCTGC
TGGAGCAACCCCAGGCAGAGGCCAAGGTGAATGGTACTACAGTGTCCTCTCCTTCTACCT
CTCTTCAGAGGTCAGACAGCAGTCAGCCTATGCTGCTCCGGGTGGTTGGCAGTCAAACTT
CAGAATCCATGGGCGAGGAAGATCTTCTCAGTCCTCCCCAGGACACAAACACAGGATTAG
AGGAAGTGATGGAGCAACTCAACAACTCTTTCCCGAGCTCAAGAGGACACAATGTAGGAA
GCCTTTTCCACTTGGCAGATGATTTGGGCAGAGCGATGGAGTCCTTAGTTTCAGTCATGA
CAGATGAAGAAGGGGCAGAATAAATGTTTTACAACTCCTGATTCCCGCATGGTTTTTATA
ATATTCATACAACAAAGAGGATTAGACAGTAAGAGTTTACAAGAAAAAAATCTATATTTT
TGTGAAGGGTAGTGGTACTATACTGTAGATTTCAGTAGTTTCTAAGTCTGTTATTGTTTT
GTTAACAATGGCAGGTTTTACACGTCTATGCAATTGTACAAAAAAGTTATAAGAAAACTA
CATGTAAAATCTTGTTAGCTAAATAACTTGCCATTTCTTTATATGGAACGCATTTTGGGT
TGTTTAAAAATTTATAACAGTTATAAAGAAAGATTGTAAACTAAAGTGTGCTTTATAAAA
AAAAAAGTTGTTTATAAAAACCCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9PTS7_CHICK

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9PTS7_CHICK

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-188, - strand, RNAz p=0.871538

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-188, - strand, RNAz p=0.871538

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               1-188, gnl|bosTau2|chrX (35397793-35397606)
               

               
               1-188, gnl|Hg17|chrX (30925236-30925049)
               

               
               1-188, gnl|Mm7|chrX (80564410-80564597)
               


               
               189-313, gnl|bosTau2|chrX (35396422-35396298)
               

               
               189-313, gnl|canFam2|chrX (26275646-26275784)
               

               
               189-313, gnl|danRer3|chr1 (5651174-5651309)
               

               
               189-313, gnl|dasNov1|scaffold_1532 (97328-97190)
               

               
               189-313, gnl|echTel1|scaffold_144729 (38-178)
               

               
               189-313, gnl|fr1|chrUn (19592355-19592227)
               

               
               189-313, gnl|galGal2|chr1 (109033147-109033010)
               

               
               189-313, gnl|hg17|chrX (30924060-30924198)
               

               
               189-313, gnl|Hg17|chrX (30924188-30924064)
               

               
               189-313, gnl|mm7|chrX (80565479-80565341)
               

               
               189-313, gnl|Mm7|chrX (80565349-80565473)
               

               
               189-313, gnl|monDom2|scaffold_29 (33863786-33863648)
               

               
               189-313, gnl|oryCun1|scaffold_215098 (309709-309847)
               

               
               189-313, gnl|panTro1|chrX (32105578-32105716)
               

               
               189-313, gnl|rheMac2|chrX (29023196-29023334)
               

               
               189-313, gnl|rn3|chrX (71726502-71726364)
               

               
               189-313, gnl|tetNig1|chr3 (3610320-3610198)
               

               
               189-313, gnl|xenTro1|scaffold_542 (777096-776956)

Aligned organism(s): 21 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-188, gnl|bosTau2|chrX (35397793-35397606)
               

               
               1-188, gnl|Hg17|chrX (30925236-30925049)
               

               
               1-188, gnl|Mm7|chrX (80564410-80564597)
               


               
               189-313, gnl|bosTau2|chrX (35396422-35396298)
               

               
               189-313, gnl|canFam2|chrX (26275646-26275784)
               

               
               189-313, gnl|danRer3|chr1 (5651174-5651309)
               

               
               189-313, gnl|dasNov1|scaffold_1532 (97328-97190)
               

               
               189-313, gnl|echTel1|scaffold_144729 (38-178)
               

               
               189-313, gnl|fr1|chrUn (19592355-19592227)
               

               
               189-313, gnl|galGal2|chr1 (109033147-109033010)
               

               
               189-313, gnl|hg17|chrX (30924060-30924198)
               

               
               189-313, gnl|Hg17|chrX (30924188-30924064)
               

               
               189-313, gnl|mm7|chrX (80565479-80565341)
               

               
               189-313, gnl|Mm7|chrX (80565349-80565473)
               

               
               189-313, gnl|monDom2|scaffold_29 (33863786-33863648)
               

               
               189-313, gnl|oryCun1|scaffold_215098 (309709-309847)
               

               
               189-313, gnl|panTro1|chrX (32105578-32105716)
               

               
               189-313, gnl|rheMac2|chrX (29023196-29023334)
               

               
               189-313, gnl|rn3|chrX (71726502-71726364)
               

               
               189-313, gnl|tetNig1|chr3 (3610320-3610198)
               

               
               189-313, gnl|xenTro1|scaffold_542 (777096-776956)

	1-188, gnl\|bosTau2\|chrX (35397793-35397606)
	1-188, gnl\|Hg17\|chrX (30925236-30925049)
	1-188, gnl\|Mm7\|chrX (80564410-80564597)

	189-313, gnl\|bosTau2\|chrX (35396422-35396298)
	189-313, gnl\|canFam2\|chrX (26275646-26275784)
	189-313, gnl\|danRer3\|chr1 (5651174-5651309)
	189-313, gnl\|dasNov1\|scaffold_1532 (97328-97190)
	189-313, gnl\|echTel1\|scaffold_144729 (38-178)
	189-313, gnl\|fr1\|chrUn (19592355-19592227)
	189-313, gnl\|galGal2\|chr1 (109033147-109033010)
	189-313, gnl\|hg17\|chrX (30924060-30924198)
	189-313, gnl\|Hg17\|chrX (30924188-30924064)
	189-313, gnl\|mm7\|chrX (80565479-80565341)
	189-313, gnl\|Mm7\|chrX (80565349-80565473)
	189-313, gnl\|monDom2\|scaffold_29 (33863786-33863648)
	189-313, gnl\|oryCun1\|scaffold_215098 (309709-309847)
	189-313, gnl\|panTro1\|chrX (32105578-32105716)
	189-313, gnl\|rheMac2\|chrX (29023196-29023334)
	189-313, gnl\|rn3\|chrX (71726502-71726364)
	189-313, gnl\|tetNig1\|chr3 (3610320-3610198)
	189-313, gnl\|xenTro1\|scaffold_542 (777096-776956)