Ss1.1-Pig4-TMW8046B21.5
|
GCTGCCAGAAGCAATCATCCGGGTCAGTGATGTCTAACATCTCCCAGGGAGACAATGAGG
TGGCGACACAACAGCATTTGTTTATTTGTAGGGAAAACTCGTGAAAGGTGATGACCTTAG
TGCAGAGCTGAGAAAACCCAATGAGTTTAAAGTGGCTAAGAACTGAAGACTGAAAAGATA
GTCCCTTCACCGTCTTGTGCACAGGGTAACCTCCAGTACTCCCTTGGCCCAAGTCTATGC
CATTAAGTTTAAAATGCAGTCACCTAACACCTTCTTATGTAGGGCTGCCTTTCATCACTC
AGCCCACAGCCTTTCTTGCCGACATTCTGGGCTGTGACTGTGTGGTTGTCATTGAGCTTC
TTGTGCAGGGCACACATATCCATGGGAACAGTTAACAATCCCTATTTGAAACTATATTTC
AAGGGGCACTGTAATGCAATAGTAAATCAAAGACCATGTTTAGTTCCTTGTGATGTATGG
ATTCACTCTGATGTAGAAAAAATAAATATGCTATGTATGTCCACACCTCTCTCCTTCGTA
AGAACACAGTGTTTATAAAACAAATGTTATAAAAATGGATGAACTGTGAGTGATCCCAAG
GATAGTTACTTCTTTTCTTAAGGGTAATAAGAAAATAATAGTTGATTAAAAGATCCAAAG
AACATATCATTCTATTTTATGTGTTCACTTATTGGGAGTTGTATTTAACAATTTAGGATC
ATTTGGTCTCTGATGAAAATGCACTTTGTGCTTTGAAGTTCTTGCTTGGATCAAAATTGT
AGAATGTAGAGACTTTCCTTACCATTTCTGCATGAACCTCACTTGTCCCACCAGACATTC
TGCTCAGGCCTCCATCTTTATCTGGGTCATCCTTATTCTTCCTTCCTGAAAATTCAAATT
TCATGTTTCCTCTGTGCTCAGAAACCTACCTTGTTCAAACCATTATCAGCCATTCAGATT
TTTTTTATTGTA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCTGCCAGAAGCAATCATCCGGGTCAGTGATGTCTAACATCTCCCAGGGAGACAATGAGG
TGGCGACACAACAGCATTTGTTTATTTGTAGGGAAAACTCGTGAAAGGTGATGACCTTAG
TGCAGAGCTGAGAAAACCCAATGAGTTTAAAGTGGCTAAGAACTGAAGACTGAAAAGATA
GTCCCTTCACCGTCTTGTGCACAGGGTAACCTCCAGTACTCCCTTGGCCCAAGTCTATGC
CATTAAGTTTAAAATGCAGTCACCTAACACCTTCTTATGTAGGGCTGCCTTTCATCACTC
AGCCCACAGCCTTTCTTGCCGACATTCTGGGCTGTGACTGTGTGGTTGTCATTGAGCTTC
TTGTGCAGGGCACACATATCCATGGGAACAGTTAACAATCCCTATTTGAAACTATATTTC
AAGGGGCACTGTAATGCAATAGTAAATCAAAGACCATGTTTAGTTCCTTGTGATGTATGG
ATTCACTCTGATGTAGAAAAAATAAATATGCTATGTATGTCCACACCTCTCTCCTTCGTA
AGAACACAGTGTTTATAAAACAAATGTTATAAAAATGGATGAACTGTGAGTGATCCCAAG
GATAGTTACTTCTTTTCTTAAGGGTAATAAGAAAATAATAGTTGATTAAAAGATCCAAAG
AACATATCATTCTATTTTATGTGTTCACTTATTGGGAGTTGTATTTAACAATTTAGGATC
ATTTGGTCTCTGATGAAAATGCACTTTGTGCTTTGAAGTTCTTGCTTGGATCAAAATTGT
AGAATGTAGAGACTTTCCTTACCATTTCTGCATGAACCTCACTTGTCCCACCAGACATTC
TGCTCAGGCCTCCATCTTTATCTGGGTCATCCTTATTCTTCCTTCCTGAAAATTCAAATT
TCATGTTTCCTCTGTGCTCAGAAACCTACCTTGTTCAAACCATTATCAGCCATTCAGATT
TTTTTTATTGTA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-376, gnl|bosTau2|chr3 (1258255-1257879) |
|
1-376, gnl|Hg17|chr8 (13123129-13122756) |
|
1-376, gnl|Mm7|chr8 (35449623-35449285) |
| |
|
423-789, gnl|bosTau2|chr3 (1257796-1257423) |
|
423-789, gnl|canFam2|chr16 (39609006-39609409) |
|
423-789, gnl|dasNov1|scaffold_27640 (6177-6556) |
|
423-789, gnl|echTel1|scaffold_233220 (4309-3922) |
|
423-789, gnl|hg17|chr8 (13122281-13122655) |
|
423-789, gnl|Hg17|chr8 (13122679-13122310) |
|
423-789, gnl|mm7|chr8 (35448827-35449194) |
|
423-789, gnl|Mm7|chr8 (35449220-35448846) |
|
423-789, gnl|oryCun1|scaffold_200168 (198169-198522) |
|
423-789, gnl|panTro1|chr7 (13721018-13721391) |
|
423-789, gnl|rheMac2|chr8 (13039446-13039819) |
|
423-789, gnl|rn3|chr16 (59247744-59247335) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-376, gnl|bosTau2|chr3 (1258255-1257879) |
|
1-376, gnl|Hg17|chr8 (13123129-13122756) |
|
1-376, gnl|Mm7|chr8 (35449623-35449285) |
| |
|
423-789, gnl|bosTau2|chr3 (1257796-1257423) |
|
423-789, gnl|canFam2|chr16 (39609006-39609409) |
|
423-789, gnl|dasNov1|scaffold_27640 (6177-6556) |
|
423-789, gnl|echTel1|scaffold_233220 (4309-3922) |
|
423-789, gnl|hg17|chr8 (13122281-13122655) |
|
423-789, gnl|Hg17|chr8 (13122679-13122310) |
|
423-789, gnl|mm7|chr8 (35448827-35449194) |
|
423-789, gnl|Mm7|chr8 (35449220-35448846) |
|
423-789, gnl|oryCun1|scaffold_200168 (198169-198522) |
|
423-789, gnl|panTro1|chr7 (13721018-13721391) |
|
423-789, gnl|rheMac2|chr8 (13039446-13039819) |
|
423-789, gnl|rn3|chr16 (59247744-59247335) |
