Non-Coding RNA Search

Ss1.1-Pig4-TMW8046B24.3

Sequence:


               
               GCTTGGCCCATAGTTATTACTCACTAAAGAGCGTTATAATCAATATTAGTTTTTTGTGAG
GAATAAATGAAATGGCTTACAGGAAAATATGTATAGGCTGTACAACATTGCACGAACACT
CATTCAGTTAAGAGTCATTGAGCTGTTGAGGAAATAAAAATGCTCAGGCAAAGGCCCTAC
TTTCCACTACTGCTGATTACAGCTGGTTGGAAATGAGAGAGCAAAGAGTCTCCTAGGACA
GCGAATGAGTAGGTGAGAAGATTCAGCTTCCTGGAGAGAGATTCTAGTCTGGCCAAGCAA
CCTTCCTTCCGGCTATAATAATCTATTGTTTGAGAAGCACTTCCACAAACTTCTTGGTAT
TACCCCTTACCTTAGCTCTGTAACATGGCAGGGTGAATGGCAACAGTTTACGGCTGAGAG
CATGGAGATTGGGAAGTGAAGTGGCTTTCACATAGGCTCTCTGCTTGTAAGTGATGGAGC
CTGGGCTCCCTCTTCCTCCTCCTGCCCACACTGTGCCTGGTGGCCATTTGTCCCAAGCCA
GAGCTTGTCAGTGTTCTAGGTATCGTTTTCCCTTGTTCTCTACTGCACAGTTGTGATTAT
TAGATCCTGAAGGTCTGCCCAAGGAAAGCTGTGTGTATGGTGGGAGAAAAGGGAGCTGAC
ACTAAGGAGCTGGGAATGGGAATCCCACTGCTCTGGGAGCTGCCCAGATGGGAATGTTGC
TTCCAGGTCAGGGGTCGCTGGACATCATGGGTATTCATCTCTGCAACCCTCCAATTCCTC
ATCAGTGAAATGGGCTAATAAAGATCTTCTTACATTCCAGTCTATCGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTGGCCCATAGTTATTACTCACTAAAGAGCGTTATAATCAATATTAGTTTTTTGTGAG
GAATAAATGAAATGGCTTACAGGAAAATATGTATAGGCTGTACAACATTGCACGAACACT
CATTCAGTTAAGAGTCATTGAGCTGTTGAGGAAATAAAAATGCTCAGGCAAAGGCCCTAC
TTTCCACTACTGCTGATTACAGCTGGTTGGAAATGAGAGAGCAAAGAGTCTCCTAGGACA
GCGAATGAGTAGGTGAGAAGATTCAGCTTCCTGGAGAGAGATTCTAGTCTGGCCAAGCAA
CCTTCCTTCCGGCTATAATAATCTATTGTTTGAGAAGCACTTCCACAAACTTCTTGGTAT
TACCCCTTACCTTAGCTCTGTAACATGGCAGGGTGAATGGCAACAGTTTACGGCTGAGAG
CATGGAGATTGGGAAGTGAAGTGGCTTTCACATAGGCTCTCTGCTTGTAAGTGATGGAGC
CTGGGCTCCCTCTTCCTCCTCCTGCCCACACTGTGCCTGGTGGCCATTTGTCCCAAGCCA
GAGCTTGTCAGTGTTCTAGGTATCGTTTTCCCTTGTTCTCTACTGCACAGTTGTGATTAT
TAGATCCTGAAGGTCTGCCCAAGGAAAGCTGTGTGTATGGTGGGAGAAAAGGGAGCTGAC
ACTAAGGAGCTGGGAATGGGAATCCCACTGCTCTGGGAGCTGCCCAGATGGGAATGTTGC
TTCCAGGTCAGGGGTCGCTGGACATCATGGGTATTCATCTCTGCAACCCTCCAATTCCTC
ATCAGTGAAATGGGCTAATAAAGATCTTCTTACATTCCAGTCTATCGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               428-722, - strand, RNAz p=0.911237

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               428-722, - strand, RNAz p=0.911237

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               579-679, + strand, RNAmicro p=0.999985

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               579-679, + strand, RNAmicro p=0.999985

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-828, gnl|bosTau2|chr8 (34644451-34643616)
               

               
               1-828, gnl|Hg17|chr9 (99313677-99312821)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-828, gnl|bosTau2|chr8 (34644451-34643616)
               

               
               1-828, gnl|Hg17|chr9 (99313677-99312821)

	1-828, gnl\|bosTau2\|chr8 (34644451-34643616)
	1-828, gnl\|Hg17\|chr9 (99313677-99312821)