Non-Coding RNA Search

Ss1.1-Pig4-TMW8046D14.5

Sequence:


               
               GGAGAAGCAGTCTCAGATCCTGACGGTGCAGCAGCGCGCAGCCTCAGCCAGAGAGTCCCA
GCCGCTTTCAATGGAGGAGAAGCCCGGCCAGCCACAGTCTCAGCACCATCACAGCCACCA
CCATCCGCACCATCACCCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCCGCACCACCA
CCACCATTATTATTTCTACAACCATAGCCACAACCACCATCACCACCACCATCACCAGCA
GCCTCACCAATACCTGCAGCATGGAGCCGAGGGCAGTCCCAAGGCCCAGCCAAAGCCGCT
GAAACATGAGCAGAAACACGCCCTCCAGCAGCACCAGGAAACGCCGAAGAAGAAAACAGG
CTATGGTGAACTAAATGGTAATGCTGGAGAAAGAGAAATTTCTTTAAAGAGCCTGGGTTC
TGATGAAGCTACCAACCCTATTTCCAGGGTACTCAATGGCAACCAACAAGTTGTAGACAC
TAACCTGAAGCAGACTGTAAGGTCCAGCACCTTTGGGAAAGCAGGAATTAAAACCAGGAA
TTTCATTCAGAAAAACAGTATGGACAAAAAGAATGGAAAGTCTTATGAAAATAAATCTGG
AGAGAACCAATCTGTAGACAAGACTGATGCTGTAGCAATTCCAAATGGTGTTGTAACAAA
TAATTCTGGCTATATTACTAATGGTTATATGGGCAAAGGAGCAGATAATGATGGTAGTGG
ATCTGAGAGCGGATATACCACTCCTAAAAAAAGGAAAGCTAGGCGCAATAGTGCCAAGGG
TTGTGAAAACCTTAATTTAGTGCAGGACAAAATAATGCAACAAGAGACCAATGTCCCAAC
CTTAAAACAGGGACTTGAAACTTTCAAGCCTGACTACAGTGAACAAAAGGGAAATCGAGT
AGATGGTTCAAAGCCCATTTGGAAGTATGAAACTGGGCCTGGAGGAACAAGTCGAGGAAA
ACCTGCTATGGGTGATATGCTGAGGAAAAGCTCTGATACTAAACCTGGTGTGAGCAGCAA
AAAGTTTGATGATCGGCCCAAAGGAAAGCATACTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGAAGCAGTCTCAGATCCTGACGGTGCAGCAGCGCGCAGCCTCAGCCAGAGAGTCCCA
GCCGCTTTCAATGGAGGAGAAGCCCGGCCAGCCACAGTCTCAGCACCATCACAGCCACCA
CCATCCGCACCATCACCCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCCGCACCACCA
CCACCATTATTATTTCTACAACCATAGCCACAACCACCATCACCACCACCATCACCAGCA
GCCTCACCAATACCTGCAGCATGGAGCCGAGGGCAGTCCCAAGGCCCAGCCAAAGCCGCT
GAAACATGAGCAGAAACACGCCCTCCAGCAGCACCAGGAAACGCCGAAGAAGAAAACAGG
CTATGGTGAACTAAATGGTAATGCTGGAGAAAGAGAAATTTCTTTAAAGAGCCTGGGTTC
TGATGAAGCTACCAACCCTATTTCCAGGGTACTCAATGGCAACCAACAAGTTGTAGACAC
TAACCTGAAGCAGACTGTAAGGTCCAGCACCTTTGGGAAAGCAGGAATTAAAACCAGGAA
TTTCATTCAGAAAAACAGTATGGACAAAAAGAATGGAAAGTCTTATGAAAATAAATCTGG
AGAGAACCAATCTGTAGACAAGACTGATGCTGTAGCAATTCCAAATGGTGTTGTAACAAA
TAATTCTGGCTATATTACTAATGGTTATATGGGCAAAGGAGCAGATAATGATGGTAGTGG
ATCTGAGAGCGGATATACCACTCCTAAAAAAAGGAAAGCTAGGCGCAATAGTGCCAAGGG
TTGTGAAAACCTTAATTTAGTGCAGGACAAAATAATGCAACAAGAGACCAATGTCCCAAC
CTTAAAACAGGGACTTGAAACTTTCAAGCCTGACTACAGTGAACAAAAGGGAAATCGAGT
AGATGGTTCAAAGCCCATTTGGAAGTATGAAACTGGGCCTGGAGGAACAAGTCGAGGAAA
ACCTGCTATGGGTGATATGCTGAGGAAAAGCTCTGATACTAAACCTGGTGTGAGCAGCAA
AAAGTTTGATGATCGGCCCAAAGGAAAGCATACTTC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               677-848, - strand, RNAz p=0.993278
               

               
               717-833, - strand, RNAz p=0.895331

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               677-848, - strand, RNAz p=0.993278
               

               
               717-833, - strand, RNAz p=0.895331

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               358-848, gnl|bosTau2|chr19 (14278509-14278999)
               

               
               358-848, gnl|canFam2|chr9 (46730780-46731267)
               

               
               358-848, gnl|danRer3|chr15 (37270176-37269713)
               

               
               358-848, gnl|dasNov1|scaffold_24080 (19634-20121)
               

               
               358-848, gnl|echTel1|scaffold_235722 (8984-9471)
               

               
               358-848, gnl|fr1|chrUn (203004073-203004521)
               

               
               358-848, gnl|galGal2|chr19 (5582389-5582879)
               

               
               358-848, gnl|hg17|chr17 (24638373-24638860)
               

               
               358-848, gnl|Hg17|chr17 (24638862-24638372)
               

               
               358-848, gnl|loxAfr1|scaffold_476 (88381-87894)
               

               
               358-848, gnl|mm7|chr11 (77773603-77773119)
               

               
               358-848, gnl|Mm7|chr11 (77773115-77773602)
               

               
               358-848, gnl|monDom2|scaffold_44 (15358915-15359408)
               

               
               358-848, gnl|oryCun1|scaffold_209736 (3555-4042)
               

               
               358-848, gnl|panTro1|chr19 (27982084-27982571)
               

               
               358-848, gnl|rheMac2|chr16 (24502329-24502816)
               

               
               358-848, gnl|rn3|chr10 (63745231-63744747)
               

               
               358-848, gnl|tetNig1|chr7 (5798767-5798316)
               

               
               358-848, gnl|xenTro1|scaffold_370 (221073-220592)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               358-848, gnl|bosTau2|chr19 (14278509-14278999)
               

               
               358-848, gnl|canFam2|chr9 (46730780-46731267)
               

               
               358-848, gnl|danRer3|chr15 (37270176-37269713)
               

               
               358-848, gnl|dasNov1|scaffold_24080 (19634-20121)
               

               
               358-848, gnl|echTel1|scaffold_235722 (8984-9471)
               

               
               358-848, gnl|fr1|chrUn (203004073-203004521)
               

               
               358-848, gnl|galGal2|chr19 (5582389-5582879)
               

               
               358-848, gnl|hg17|chr17 (24638373-24638860)
               

               
               358-848, gnl|Hg17|chr17 (24638862-24638372)
               

               
               358-848, gnl|loxAfr1|scaffold_476 (88381-87894)
               

               
               358-848, gnl|mm7|chr11 (77773603-77773119)
               

               
               358-848, gnl|Mm7|chr11 (77773115-77773602)
               

               
               358-848, gnl|monDom2|scaffold_44 (15358915-15359408)
               

               
               358-848, gnl|oryCun1|scaffold_209736 (3555-4042)
               

               
               358-848, gnl|panTro1|chr19 (27982084-27982571)
               

               
               358-848, gnl|rheMac2|chr16 (24502329-24502816)
               

               
               358-848, gnl|rn3|chr10 (63745231-63744747)
               

               
               358-848, gnl|tetNig1|chr7 (5798767-5798316)
               

               
               358-848, gnl|xenTro1|scaffold_370 (221073-220592)

	677-848, - strand, RNAz p=0.993278
	717-833, - strand, RNAz p=0.895331

	358-848, gnl\|bosTau2\|chr19 (14278509-14278999)
	358-848, gnl\|canFam2\|chr9 (46730780-46731267)
	358-848, gnl\|danRer3\|chr15 (37270176-37269713)
	358-848, gnl\|dasNov1\|scaffold_24080 (19634-20121)
	358-848, gnl\|echTel1\|scaffold_235722 (8984-9471)
	358-848, gnl\|fr1\|chrUn (203004073-203004521)
	358-848, gnl\|galGal2\|chr19 (5582389-5582879)
	358-848, gnl\|hg17\|chr17 (24638373-24638860)
	358-848, gnl\|Hg17\|chr17 (24638862-24638372)
	358-848, gnl\|loxAfr1\|scaffold_476 (88381-87894)
	358-848, gnl\|mm7\|chr11 (77773603-77773119)
	358-848, gnl\|Mm7\|chr11 (77773115-77773602)
	358-848, gnl\|monDom2\|scaffold_44 (15358915-15359408)
	358-848, gnl\|oryCun1\|scaffold_209736 (3555-4042)
	358-848, gnl\|panTro1\|chr19 (27982084-27982571)
	358-848, gnl\|rheMac2\|chr16 (24502329-24502816)
	358-848, gnl\|rn3\|chr10 (63745231-63744747)
	358-848, gnl\|tetNig1\|chr7 (5798767-5798316)
	358-848, gnl\|xenTro1\|scaffold_370 (221073-220592)