Ss1.1-Pig4-TMW8046H23.3
|
CTCATTTAACTCATGACAACCATATCATTAGCCCCATTCTGCAGATGAGGGCACTGATAC
ACCAAGAGATAAGGTCATGTATCCAAGGTCACATAACAAGTAATAGAACTGGCCAAGGTT
TAGACCTAAGCAGTCTGATATCAAGCTTGCCTCTGACCACTGCGCCATCCTCCAATTAAG
TCATCTCGAAAGGGCTCTCTTAACAAGCACCCCCAAAGGCTGGGGTGAGCAGGAGAAACT
GGTATTCCAGTGAGCTTCTGAATTAGTTGAAATGAAGAGGGTAAGGGAGAGTGCCATTTC
CAAGGATTGATGAGGTGACGTGGCCTGACTCAAGACAAAAGATTTCCGGAAGTTCCCTTG
TGGCAACCTTGTGGTTAAGGATATGGTGTTTTCACTGCAGTGGCTCGGGTCGCTCCTGTG
GCACTTGTTTGATCTCTTGCCCGGGAACTTCCACCTGCCTCGGGTATGGCCAAAAAAGAA
AAAAGGCAAGAGGTTTCCAAGATTTAATGTCAGGGTGGCTGCCCCTCTTCTGCAGGCACT
GGTTAAAGCAGGCCAGGAGCAGGTGAAAGTGAAATGTCTTCTGTGCCAGTGGGTGGAGTA
ACCCTTGGGTCTTTGGTACCCAGCTGTGTGGTACCTGGTACATATCAGTCATCCCCAAGC
CTCTTTCTTCCCTAGTTGAATATGGATGTCCTTGTCACCTGTCTCCCTCCCAGGTGCTGG
CCAGAATCGGGGAAGATAGAGGGATAGAGGTGCATTTCTGGGAACTCTAGCAACCCAGGG
TGTCTTGGGCCTGATTTTCCAGTCTCCTCTGAGACAGTTTCTGGATTCAGATTGGGAGGG
TATATTAATAATGATCATTCTAGGTAAGATGTAATTCAGCATAATCTTTACCACAAGCCA
TTCTGCAGATTTTATACCTGTAAATTCATTGGCTGAGTTACAGAAAAGTTACCTGCCCAA
GATGGTGTAGCCAGAATTAAAATCCAGGCAGTCTGAATCCACAGCTCATGTTCTTTACTC
CTGTGCTACACTGCCCCCCACCTAAAAGTGACCCTCCTAAAGATGCTCAGACCTCGTCAA
GGGAAGAGGTCACCCATGCAGGTGCCCATACATTCTTTCTTCCCTGTGATGGGGACAGTG
GCTTTTAAAGGGCCAAGGTGGGGAATTTCCTGGTGGCTTAAGGGTCTAGTGTTGTTACTA
CTACGGCTCAGGTTACCACTCTGATACAGCTTTGACCCCTGGCCCAGGAGCTTCCACATG
CCATGGGTACAG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTCATTTAACTCATGACAACCATATCATTAGCCCCATTCTGCAGATGAGGGCACTGATAC
ACCAAGAGATAAGGTCATGTATCCAAGGTCACATAACAAGTAATAGAACTGGCCAAGGTT
TAGACCTAAGCAGTCTGATATCAAGCTTGCCTCTGACCACTGCGCCATCCTCCAATTAAG
TCATCTCGAAAGGGCTCTCTTAACAAGCACCCCCAAAGGCTGGGGTGAGCAGGAGAAACT
GGTATTCCAGTGAGCTTCTGAATTAGTTGAAATGAAGAGGGTAAGGGAGAGTGCCATTTC
CAAGGATTGATGAGGTGACGTGGCCTGACTCAAGACAAAAGATTTCCGGAAGTTCCCTTG
TGGCAACCTTGTGGTTAAGGATATGGTGTTTTCACTGCAGTGGCTCGGGTCGCTCCTGTG
GCACTTGTTTGATCTCTTGCCCGGGAACTTCCACCTGCCTCGGGTATGGCCAAAAAAGAA
AAAAGGCAAGAGGTTTCCAAGATTTAATGTCAGGGTGGCTGCCCCTCTTCTGCAGGCACT
GGTTAAAGCAGGCCAGGAGCAGGTGAAAGTGAAATGTCTTCTGTGCCAGTGGGTGGAGTA
ACCCTTGGGTCTTTGGTACCCAGCTGTGTGGTACCTGGTACATATCAGTCATCCCCAAGC
CTCTTTCTTCCCTAGTTGAATATGGATGTCCTTGTCACCTGTCTCCCTCCCAGGTGCTGG
CCAGAATCGGGGAAGATAGAGGGATAGAGGTGCATTTCTGGGAACTCTAGCAACCCAGGG
TGTCTTGGGCCTGATTTTCCAGTCTCCTCTGAGACAGTTTCTGGATTCAGATTGGGAGGG
TATATTAATAATGATCATTCTAGGTAAGATGTAATTCAGCATAATCTTTACCACAAGCCA
TTCTGCAGATTTTATACCTGTAAATTCATTGGCTGAGTTACAGAAAAGTTACCTGCCCAA
GATGGTGTAGCCAGAATTAAAATCCAGGCAGTCTGAATCCACAGCTCATGTTCTTTACTC
CTGTGCTACACTGCCCCCCACCTAAAAGTGACCCTCCTAAAGATGCTCAGACCTCGTCAA
GGGAAGAGGTCACCCATGCAGGTGCCCATACATTCTTTCTTCCCTGTGATGGGGACAGTG
GCTTTTAAAGGGCCAAGGTGGGGAATTTCCTGGTGGCTTAAGGGTCTAGTGTTGTTACTA
CTACGGCTCAGGTTACCACTCTGATACAGCTTTGACCCCTGGCCCAGGAGCTTCCACATG
CCATGGGTACAG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-257, gnl|bosTau2|chr18 (45543190-45542933) |
|
1-257, gnl|canFam2|chr1 (116754318-116753932) |
|
1-257, gnl|hg17|chr19 (44553255-44553632) |
|
1-257, gnl|Hg17|chr19 (44553303-44553544) |
|
1-257, gnl|mm7|chr7 (25346509-25346176) |
|
1-257, gnl|oryCun1|scaffold_102062 (864-471) |
|
1-257, gnl|panTro1|chr20 (41498201-41498578) |
|
1-257, gnl|rn3|chr1 (83598376-83598032) |
| |
|
483-1111, gnl|bosTau2|chr18 (45542798-45542173) |
|
483-1111, gnl|Hg17|chr19 (44553614-44554521) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-257, gnl|bosTau2|chr18 (45543190-45542933) |
|
1-257, gnl|canFam2|chr1 (116754318-116753932) |
|
1-257, gnl|hg17|chr19 (44553255-44553632) |
|
1-257, gnl|Hg17|chr19 (44553303-44553544) |
|
1-257, gnl|mm7|chr7 (25346509-25346176) |
|
1-257, gnl|oryCun1|scaffold_102062 (864-471) |
|
1-257, gnl|panTro1|chr20 (41498201-41498578) |
|
1-257, gnl|rn3|chr1 (83598376-83598032) |
| |
|
483-1111, gnl|bosTau2|chr18 (45542798-45542173) |
|
483-1111, gnl|Hg17|chr19 (44553614-44554521) |
