Non-Coding RNA Search

Ss1.1-Pig4-TMW8046I20.3

Sequence:


               
               CTTGAAACAAATGAATGTTGGTGAAGATTTAGAAAGAGAAGACCTTGATAGTCGTAGGTA
CAAATACTTGGATGATGATGGATCTATCTCTCCTATTGAAGAGTTAACGTAAGTGCAATC
ATGGGAATAATTTGGAACATAGGTTGTAAAGTTAAATGTCTTTAAATTTTAATGTTAATT
TGTCCATATTGTGCTATCATAAATTTTTGATAATAGTGATGTGAGCACAGATAAAACATG
CCATTTGGGTCATCACAGTCGCTGTGAGCTTTGTATTCCATTTGGGCGTGTTAGACGTGA
TTTTCTTCTTGACTGATAATGACATTTCAGTTGTATATCACGACAGCATACTTGGGTTAT
AGAAGATTTTGTCATCTGAGTGATTATGTTTTTAATATTACAGAGCAGAGGAGGAAAATG
CAACAAATCTTGAACATGATGAATGTGATATTAAATTAGTGGTAAGTGACATTACCTCAT
GTCCTTTTGGGAGAACGGCAGTTGATAAAGGAGAATTTTATCTTGGAGCGTTACTGTCTA
GCTTTTGAAAGGCTCAATGCTTTTGGTGCAGGAAATAAATAAAAACAAGGGTTTTATGGA
TAACAGAATAAGGATTTTTCAAACCTATTGTGAGTTTTAATATGTGGTATTGCTACTAGT
AAATCAAATCAGCAGGAGTTAATTTGGATTTTTAATATCCAGATGTAGTTTCCAGGTTAT
TTTAAGTATTCTGGCATTCGGTTTTTATGTATAATTTAAAAACCGAAGTAAAGATTGAAT
TATTGCTTGATGTTTTATGCAGGAGAATAATTATTTCATAATAAGTTCTGAATTACCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGAAACAAATGAATGTTGGTGAAGATTTAGAAAGAGAAGACCTTGATAGTCGTAGGTA
CAAATACTTGGATGATGATGGATCTATCTCTCCTATTGAAGAGTTAACGTAAGTGCAATC
ATGGGAATAATTTGGAACATAGGTTGTAAAGTTAAATGTCTTTAAATTTTAATGTTAATT
TGTCCATATTGTGCTATCATAAATTTTTGATAATAGTGATGTGAGCACAGATAAAACATG
CCATTTGGGTCATCACAGTCGCTGTGAGCTTTGTATTCCATTTGGGCGTGTTAGACGTGA
TTTTCTTCTTGACTGATAATGACATTTCAGTTGTATATCACGACAGCATACTTGGGTTAT
AGAAGATTTTGTCATCTGAGTGATTATGTTTTTAATATTACAGAGCAGAGGAGGAAAATG
CAACAAATCTTGAACATGATGAATGTGATATTAAATTAGTGGTAAGTGACATTACCTCAT
GTCCTTTTGGGAGAACGGCAGTTGATAAAGGAGAATTTTATCTTGGAGCGTTACTGTCTA
GCTTTTGAAAGGCTCAATGCTTTTGGTGCAGGAAATAAATAAAAACAAGGGTTTTATGGA
TAACAGAATAAGGATTTTTCAAACCTATTGTGAGTTTTAATATGTGGTATTGCTACTAGT
AAATCAAATCAGCAGGAGTTAATTTGGATTTTTAATATCCAGATGTAGTTTCCAGGTTAT
TTTAAGTATTCTGGCATTCGGTTTTTATGTATAATTTAAAAACCGAAGTAAAGATTGAAT
TATTGCTTGATGTTTTATGCAGGAGAATAATTATTTCATAATAAGTTCTGAATTACCAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               665-778, + strand, RNAz p=0.919423

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               665-778, + strand, RNAz p=0.919423

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC001972, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC001972, +

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-181, gnl|bosTau2|chr29 (553973-553789)
               

               
               1-181, gnl|Hg17|chr11 (93109985-93109794)
               


               
               312-840, gnl|bosTau2|chr29 (552706-552175)
               

               
               312-840, gnl|Hg17|chr11 (93109663-93109082)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-181, gnl|bosTau2|chr29 (553973-553789)
               

               
               1-181, gnl|Hg17|chr11 (93109985-93109794)
               


               
               312-840, gnl|bosTau2|chr29 (552706-552175)
               

               
               312-840, gnl|Hg17|chr11 (93109663-93109082)

	1-181, gnl\|bosTau2\|chr29 (553973-553789)
	1-181, gnl\|Hg17\|chr11 (93109985-93109794)

	312-840, gnl\|bosTau2\|chr29 (552706-552175)
	312-840, gnl\|Hg17\|chr11 (93109663-93109082)