Non-Coding RNA Search

Ss1.1-Pig4-TMW8046M24.3

Sequence:


               
               TGAGTTTCAGATGTCTTTTTTTTTTTTTAATCAAAAGTTTCCATTCAAGATTCTGTTTCT
TAAAAGCAGTATCGATGGAGGTAAGATCGAAGTATTTTTTCAAATATAGCTTCAAAAGGA
CTTAAAACACTGTAACAGTCCCCGGCAAAACTGCTAGGCTTTTATGACCATAATAATGAA
AAAGAAGACTTCTTAGTCAGATAAGGACGGCCCCCACATGATATTCCTGAGGTTGTGTGT
CTGACATCTGGTGAGATGTCTGGTGCCATTTTATGATTTATGGTGCAGGAAATTTGAAGG
TTCTTTGGGTGCAATATAACTCAGGTGAAAAAGACACTTTGATTCAAGTCCATTTTCTTT
TATTTTTGATCATTCAGAGAAACCATTTCATGTTGCATATTAATTCTTCCCAGAGCCAGC
TGGTAGAACACGAGGCTAATGAGGCCAAAGTTGCTGGTTCAATCCCTGTACTGCAGACAG
GCCCCACGCAGGGAAAGCTTTTTCTTGTGCACCTCTAATCAAGTGCAGCTGTCTCCCGGT
TTGGCATTAGACACAAAGGAGCCCGGGTGAGGGAAGGTGAATTCCTGATGAGGAATCATC
ATCCAGGAAAAGTAGCACAAGTTTCTAACCTAGTTAATCTTACGTCTCACAACTTGACAG
CCTCCACTCACCTACATTTGTCCTTGAGGATTTTTTTTTTGAATGTAAGAGAAGATCATT
CAAATAAGGATATCACAAATGATTCACTCAACCAGGATAAAGGGAAAAATCCAAGGTGAT
GTCTGTAAGTGTAAGTGAATTCCTAAGCCGTGTCTCCTGGGCTTTGTTATTGTCAGCCAG
ACCGTTGGTATTGCTCCTGTGTTAAATCTGAACATAACTTTGCCACACAGGAAAAGAAAC
CTGCAAACAAAGATGCATTTTCAGGCTCCAGCCCAAGTTCTGCCAAGCATAGAGTTTAGA
AGTGTAACAATGGCAGCTGTTCCCACTAGTAAGAACAGCTGGGAAAAACAGAACCAGAGT
CATTATCTCTCAGATGATGATCTGTTGGAACAATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGTTTCAGATGTCTTTTTTTTTTTTTAATCAAAAGTTTCCATTCAAGATTCTGTTTCT
TAAAAGCAGTATCGATGGAGGTAAGATCGAAGTATTTTTTCAAATATAGCTTCAAAAGGA
CTTAAAACACTGTAACAGTCCCCGGCAAAACTGCTAGGCTTTTATGACCATAATAATGAA
AAAGAAGACTTCTTAGTCAGATAAGGACGGCCCCCACATGATATTCCTGAGGTTGTGTGT
CTGACATCTGGTGAGATGTCTGGTGCCATTTTATGATTTATGGTGCAGGAAATTTGAAGG
TTCTTTGGGTGCAATATAACTCAGGTGAAAAAGACACTTTGATTCAAGTCCATTTTCTTT
TATTTTTGATCATTCAGAGAAACCATTTCATGTTGCATATTAATTCTTCCCAGAGCCAGC
TGGTAGAACACGAGGCTAATGAGGCCAAAGTTGCTGGTTCAATCCCTGTACTGCAGACAG
GCCCCACGCAGGGAAAGCTTTTTCTTGTGCACCTCTAATCAAGTGCAGCTGTCTCCCGGT
TTGGCATTAGACACAAAGGAGCCCGGGTGAGGGAAGGTGAATTCCTGATGAGGAATCATC
ATCCAGGAAAAGTAGCACAAGTTTCTAACCTAGTTAATCTTACGTCTCACAACTTGACAG
CCTCCACTCACCTACATTTGTCCTTGAGGATTTTTTTTTTGAATGTAAGAGAAGATCATT
CAAATAAGGATATCACAAATGATTCACTCAACCAGGATAAAGGGAAAAATCCAAGGTGAT
GTCTGTAAGTGTAAGTGAATTCCTAAGCCGTGTCTCCTGGGCTTTGTTATTGTCAGCCAG
ACCGTTGGTATTGCTCCTGTGTTAAATCTGAACATAACTTTGCCACACAGGAAAAGAAAC
CTGCAAACAAAGATGCATTTTCAGGCTCCAGCCCAAGTTCTGCCAAGCATAGAGTTTAGA
AGTGTAACAATGGCAGCTGTTCCCACTAGTAAGAACAGCTGGGAAAAACAGAACCAGAGT
CATTATCTCTCAGATGATGATCTGTTGGAACAATGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               898-1056, - strand, RNAz p=0.940351

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               898-1056, - strand, RNAz p=0.940351

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               869-968, - strand, RNAmicro p=0.957009

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               869-968, - strand, RNAmicro p=0.957009

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               26-1056, gnl|bosTau2|chr12 (41894600-41895658)
               

               
               26-1056, gnl|Hg17|chr13 (102883439-102882417)
               

               
               26-1056, gnl|Mm7|chr8 (5559622-5558658)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-1056, gnl|bosTau2|chr12 (41894600-41895658)
               

               
               26-1056, gnl|Hg17|chr13 (102883439-102882417)
               

               
               26-1056, gnl|Mm7|chr8 (5559622-5558658)

	26-1056, gnl\|bosTau2\|chr12 (41894600-41895658)
	26-1056, gnl\|Hg17\|chr13 (102883439-102882417)
	26-1056, gnl\|Mm7\|chr8 (5559622-5558658)