Non-Coding RNA Search

Ss1.1-Pig4-TMW8046N02.5

Sequence:


               
               GGACACGGGACACGGAAGGTCGGTGTTGTCAGCATAGAGCGCTTGTCTGAACACATGGGG
CAGAATTTTAAAAACCTAGAGGATTTTGTTTAGAACTCCAAAGTTCAACTAATGCCCTAT
TTTAGGGTGAAAACAAGTATAAATCTGAAAATGATGCACAGCATCCATGAGCAATTCTCC
TTTCATAGTAATTTTGCAGTAGTGTCATTAACTACGACAGATAGTGAAGGTTCACATTTC
TAACGAGAAATAACGACGGGTTGAATATTCTCTTTCCTATCACAAGTGATAACCAGTGTT
TGATATTTTACATTTTCTTCCAAGAAATATCAGTCTGTCAACGTTTTAAAATAAAATGTT
TGCAGTAACAATTATCTTAGAACTTTAAATTAAAAAATGATTCTGAATTTAGAGACTTTC
AAAAAAGACCTAAGTGTAACGTCAGGGTCCTCTGACAAACAAATTATTAAAACAGAGACC
AGATGAGGCCTTAAAAATAGACAATGTACTATATTTGAAACAAGACTGTACTCTTGAATT
TTTGAATATATCAGAATTGCATTATTATTTCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACACGGGACACGGAAGGTCGGTGTTGTCAGCATAGAGCGCTTGTCTGAACACATGGGG
CAGAATTTTAAAAACCTAGAGGATTTTGTTTAGAACTCCAAAGTTCAACTAATGCCCTAT
TTTAGGGTGAAAACAAGTATAAATCTGAAAATGATGCACAGCATCCATGAGCAATTCTCC
TTTCATAGTAATTTTGCAGTAGTGTCATTAACTACGACAGATAGTGAAGGTTCACATTTC
TAACGAGAAATAACGACGGGTTGAATATTCTCTTTCCTATCACAAGTGATAACCAGTGTT
TGATATTTTACATTTTCTTCCAAGAAATATCAGTCTGTCAACGTTTTAAAATAAAATGTT
TGCAGTAACAATTATCTTAGAACTTTAAATTAAAAAATGATTCTGAATTTAGAGACTTTC
AAAAAAGACCTAAGTGTAACGTCAGGGTCCTCTGACAAACAAATTATTAAAACAGAGACC
AGATGAGGCCTTAAAAATAGACAATGTACTATATTTGAAACAAGACTGTACTCTTGAATT
TTTGAATATATCAGAATTGCATTATTATTTCAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               361-552, - strand, RNAz p=0.534018

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               361-552, - strand, RNAz p=0.534018

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-566, gnl|bosTau2|chr21 (47072022-47071456)
               

               
               3-566, gnl|Hg17|chr14 (102442864-102442293)
               

               
               3-566, gnl|Mm7|chr12 (108779444-108778891)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-566, gnl|bosTau2|chr21 (47072022-47071456)
               

               
               3-566, gnl|Hg17|chr14 (102442864-102442293)
               

               
               3-566, gnl|Mm7|chr12 (108779444-108778891)

	3-566, gnl\|bosTau2\|chr21 (47072022-47071456)
	3-566, gnl\|Hg17\|chr14 (102442864-102442293)
	3-566, gnl\|Mm7\|chr12 (108779444-108778891)