Non-Coding RNA Search

Ss1.1-Pig4-TMW8046O02.5

Sequence:


               
               CCTTCAAGACGCGCTTCCTGCTGCGCACCCACCTGCGCAAGCACAGTGAGGCCAAGCCCT
ACGTGTGCAACGTGTGCCACCGTGCGTTCCGCTGGGCCGCAGGCCTGCGCCATCATGCCC
TCACCCACACTGACCGCCACCCGTTCTTCTGCCGCCTGTGCAGCTACAAGGCCAAGCAGA
AATTCCAGGTGGTCAAGCACGTGCGCAGACACCACCCTGACCAGGCTGACCCAAGCCAGG
GCGTTGGCAAAGACCCCACCACCCCCACGGTGCACCTGCATGACGTGCAGTTGGAGGGTC
CCAGCCCTCCTGCTCCCGCTGCTCCCCCCACCGGACCTGAGGGCTGAGAGCCTCCCCAGA
TAAGAAGAGGGTGTGGGCACGTGCGGTGCAGACTGGAGCCGGAGCCAGCCTGGGAGCTCA
GGGCCCAAGGAAGGGCTGGCTTCAAGGTGCCAGGGAGGCTGGAACCCTCCTGGGACTCTG
GCTGTAGTACTTGGAAGTTGACATAAAAGGGAGACATGGACCACAAATTGGCTTCTCTTG
AGGCACACTGTGTTTTTAACCTATGAATTCCTAATTTTTTTTCACCATCACTTCGCCAAA
GTCCCTGCCTATAAGATCGTGATTTTACCCATTTCATCTTTTCTTTCCTTCTTACCGTGT
CAAGTCCTGTTTTCCTTCAGCATCCTCAAAACAGTTGTATCTAACTGCATGTGCTGTTGT
GCCCACTGCTGTGTAACGCATGGTAAATGATCTGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTCAAGACGCGCTTCCTGCTGCGCACCCACCTGCGCAAGCACAGTGAGGCCAAGCCCT
ACGTGTGCAACGTGTGCCACCGTGCGTTCCGCTGGGCCGCAGGCCTGCGCCATCATGCCC
TCACCCACACTGACCGCCACCCGTTCTTCTGCCGCCTGTGCAGCTACAAGGCCAAGCAGA
AATTCCAGGTGGTCAAGCACGTGCGCAGACACCACCCTGACCAGGCTGACCCAAGCCAGG
GCGTTGGCAAAGACCCCACCACCCCCACGGTGCACCTGCATGACGTGCAGTTGGAGGGTC
CCAGCCCTCCTGCTCCCGCTGCTCCCCCCACCGGACCTGAGGGCTGAGAGCCTCCCCAGA
TAAGAAGAGGGTGTGGGCACGTGCGGTGCAGACTGGAGCCGGAGCCAGCCTGGGAGCTCA
GGGCCCAAGGAAGGGCTGGCTTCAAGGTGCCAGGGAGGCTGGAACCCTCCTGGGACTCTG
GCTGTAGTACTTGGAAGTTGACATAAAAGGGAGACATGGACCACAAATTGGCTTCTCTTG
AGGCACACTGTGTTTTTAACCTATGAATTCCTAATTTTTTTTCACCATCACTTCGCCAAA
GTCCCTGCCTATAAGATCGTGATTTTACCCATTTCATCTTTTCTTTCCTTCTTACCGTGT
CAAGTCCTGTTTTCCTTCAGCATCCTCAAAACAGTTGTATCTAACTGCATGTGCTGTTGT
GCCCACTGCTGTGTAACGCATGGTAAATGATCTGTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-319, - strand, RNAz p=0.987609

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-319, - strand, RNAz p=0.987609

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               111-224, - strand, RNAmicro p=0.99985
               

               
               232-336, - strand, RNAmicro p=0.926769

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               111-224, - strand, RNAmicro p=0.99985
               

               
               232-336, - strand, RNAmicro p=0.926769

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-400, gnl|bosTau2|chr2 (59487598-59487999)
               

               
               1-400, gnl|Hg17|chr2 (219328913-219328517)
               

               
               1-400, gnl|Mm7|chr1 (74806897-74806511)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-400, gnl|bosTau2|chr2 (59487598-59487999)
               

               
               1-400, gnl|Hg17|chr2 (219328913-219328517)
               

               
               1-400, gnl|Mm7|chr1 (74806897-74806511)

	111-224, - strand, RNAmicro p=0.99985
	232-336, - strand, RNAmicro p=0.926769

	1-400, gnl\|bosTau2\|chr2 (59487598-59487999)
	1-400, gnl\|Hg17\|chr2 (219328913-219328517)
	1-400, gnl\|Mm7\|chr1 (74806897-74806511)