Non-Coding RNA Search

Ss1.1-Pig4-TMW8047B04.5

Sequence:


               
               CGACTTCGACAACTCGCCCGTGCTGCAGGACTGGGTCACGGCCACCGACATCCGCGTGGC
CTTCAGCCGCCTGCACACGTTCGGCGACGAGAACGAGGACGACTCGGAGCTGGCGCGCGA
CTCGTACTTCTACGCCGTGTCGGACCTGCAGGTGGGCGGCCGCTGCAAGTGCAACGGCCA
CGCGGCGCGCTGCGTGCGCGACCGCGACGACAGCCTGGTGTGCGACTGCAGGCACAACAC
CGCCGGCCCGGAGTGCGACCGCTGCAAGCCCTTCCACTACGACCGGCCCTGGCAGCGCGC
CACCGCCCGCGAGGCCAACGAATGCGTGGCCTGTAACTGCAACCTGCACGCTCGCCGCTG
CCGCTTCAACATGGAGCTTTACAAGCTGTCGGGGCGCAAGAGCGGGGGCGTCTGCCTCAA
CTGCCGCCACAACACGGCCGGTCGCCACTGCCACTACTGCAAGGAGGGCTACTTCCGCGA
CCTGGGCAAGCCCATCACCCACCGCAAGGCCTGCAAAGCCTGTGATTGTCACCCGGTGGG
CGCCGCTGGCAAGACCTGCAACCAGACCACGGGCCAGTGTCCCTGCAAGGACGGCGTGAC
CGGCGTCACCTGCAACCGCTGCGCCAAGGGCTACCAGCAGAGCCGCTCCCCCATCGCCCC
CTGCATAAAGATCCCCGTGGCGCCGCCGACCACCGCCGCCAGCAGCGTGGAGGAGCCCGA
AGACTGTGACTCCTACTGCAAGGCCTCCAAGGGAAAGCTGAAGATTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGACTTCGACAACTCGCCCGTGCTGCAGGACTGGGTCACGGCCACCGACATCCGCGTGGC
CTTCAGCCGCCTGCACACGTTCGGCGACGAGAACGAGGACGACTCGGAGCTGGCGCGCGA
CTCGTACTTCTACGCCGTGTCGGACCTGCAGGTGGGCGGCCGCTGCAAGTGCAACGGCCA
CGCGGCGCGCTGCGTGCGCGACCGCGACGACAGCCTGGTGTGCGACTGCAGGCACAACAC
CGCCGGCCCGGAGTGCGACCGCTGCAAGCCCTTCCACTACGACCGGCCCTGGCAGCGCGC
CACCGCCCGCGAGGCCAACGAATGCGTGGCCTGTAACTGCAACCTGCACGCTCGCCGCTG
CCGCTTCAACATGGAGCTTTACAAGCTGTCGGGGCGCAAGAGCGGGGGCGTCTGCCTCAA
CTGCCGCCACAACACGGCCGGTCGCCACTGCCACTACTGCAAGGAGGGCTACTTCCGCGA
CCTGGGCAAGCCCATCACCCACCGCAAGGCCTGCAAAGCCTGTGATTGTCACCCGGTGGG
CGCCGCTGGCAAGACCTGCAACCAGACCACGGGCCAGTGTCCCTGCAAGGACGGCGTGAC
CGGCGTCACCTGCAACCGCTGCGCCAAGGGCTACCAGCAGAGCCGCTCCCCCATCGCCCC
CTGCATAAAGATCCCCGTGGCGCCGCCGACCACCGCCGCCAGCAGCGTGGAGGAGCCCGA
AGACTGTGACTCCTACTGCAAGGCCTCCAAGGGAAAGCTGAAGATTAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|2183225|gb|AAB60881.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|2183225|gb|AAB60881.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               398-515, + strand, RNAz p=0.535506

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               398-515, + strand, RNAz p=0.535506

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               8-325, gnl|bosTau2|chr25 (1603538-1603230)
               

               
               8-325, gnl|Hg17|chr16 (2462319-2462627)
               

               
               8-325, gnl|Mm7|chr17 (22389196-22388888)
               


               
               329-515, gnl|bosTau2|chr18 (50523997-50524183)
               

               
               329-515, gnl|Hg17|chr19 (53859837-53859651)
               

               
               329-515, gnl|Mm7|chr7 (41867341-41867527)
               


               
               517-664, gnl|bosTau2|chr18 (50524355-50524502)
               

               
               517-664, gnl|Hg17|chr19 (53859363-53859216)
               

               
               517-664, gnl|Mm7|chr7 (41867705-41867852)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-325, gnl|bosTau2|chr25 (1603538-1603230)
               

               
               8-325, gnl|Hg17|chr16 (2462319-2462627)
               

               
               8-325, gnl|Mm7|chr17 (22389196-22388888)
               


               
               329-515, gnl|bosTau2|chr18 (50523997-50524183)
               

               
               329-515, gnl|Hg17|chr19 (53859837-53859651)
               

               
               329-515, gnl|Mm7|chr7 (41867341-41867527)
               


               
               517-664, gnl|bosTau2|chr18 (50524355-50524502)
               

               
               517-664, gnl|Hg17|chr19 (53859363-53859216)
               

               
               517-664, gnl|Mm7|chr7 (41867705-41867852)

	8-325, gnl\|bosTau2\|chr25 (1603538-1603230)
	8-325, gnl\|Hg17\|chr16 (2462319-2462627)
	8-325, gnl\|Mm7\|chr17 (22389196-22388888)

	329-515, gnl\|bosTau2\|chr18 (50523997-50524183)
	329-515, gnl\|Hg17\|chr19 (53859837-53859651)
	329-515, gnl\|Mm7\|chr7 (41867341-41867527)

	517-664, gnl\|bosTau2\|chr18 (50524355-50524502)
	517-664, gnl\|Hg17\|chr19 (53859363-53859216)
	517-664, gnl\|Mm7\|chr7 (41867705-41867852)