Non-Coding RNA Search

Ss1.1-Pig4-TMW8047C10.3

Sequence:


               
               CCCAGAGCGGGCGGGGTGCTCTGAAGGGAGGCTGATGGGACTCAGAAAGGACTAATAGGT
AGATGCAGACTACTGCAGGTAGGATAAATAAACCCCAAGGTCCTACTGGACAGCGCAGGG
AACCATACGCCATATCCTGTGATAAACCATGAAAATATTTTGAAAAGGAATGTACATATC
TGGATAACTGAAGCAGTGTGTTGTACGGTAGAAATTAACACAGCATTTGAATCAACTCCA
CATTAGTAAAATAAATTTGAAAAAAAGAAATGTATGCATAACAAAACAGAACCTTATGAA
AAAAAAAGATTTAAAAACAGTCCAAGCATTGCTTTCATGGAGACTAAAAACCTCAGACGG
AGACTCTTGTCCATTTTCCAGGCTAAAAAAAACCCATCACTTATTACAGCCCAATAATCG
CAATGCTCTTTTCATTGCTCTTGCTTGCTCTCTCTGGCCTCCCCACAGAGGAGAGAGAGG
GCAGGTAGAAACGTGCATGGACTTGGTCTTGTTCCCTCCGCTGGAGGCTGATTCATCGGT
TTCCCTAGGAGAACCTACGTTAAAGAGGTTAAGTGTCTGCTGGCTCCTTTCATGTTAAAA
ATAAACACCATCACGAAACAGTGGCATTGGTAGGCTTTACCCTCAGATCTCAGAAAGCCA
ACTTCCCATCTCCCTGGAAATCCAAACCAAACAAGATTTTCTCCTGGTATAGGGCCAGAA
GCAGAAGCCAACATAATGCGCCAGCCCTAAGCACGTATTTGTCCCTCCCCTTGGCAGCAT
TCCTGCTGGAGGAGCTGTATAAATATAGGCCTTAATATTTAAAACCTCGGGCCATTAATC
TCCTGCTCGTCCTGCTTCCCCAGCTCACTCTCCGGGCACCCACCCCCTCCCCCGACCAAA
TTCATTTTTAAAGCCCAGCTTGATTATGCAGCCAGATAGTAATTTCAGTGAAAAATGACA
AGTTCAGTCACTGCCCCAACCTATAGCTCTTGCATGATTTAAGTTACTGCTCTAATTTTT
TGTGAAGTCCAGGTAATTTAGAGCGTGGCTGTGTTTTACTGTCCTTTCGCCAGCCCATTG
GAGTTGCCATGATCTGTGCATTCAAAATTCATAAGACCCTCTCAGCCATGGCCTGGGAAG
TGAATTTAATTTTTGATCACTTTTGATGCTCTTGATATTTATTATGATGTCCTCCCCGCC
CCGCTTCAAGGGGATGGTGGCAGGGAAGAGAGACCACTTAAAAATGTTTCCAGCTAACAG
AACTTCAGAAACCCAGACTGTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAGAGCGGGCGGGGTGCTCTGAAGGGAGGCTGATGGGACTCAGAAAGGACTAATAGGT
AGATGCAGACTACTGCAGGTAGGATAAATAAACCCCAAGGTCCTACTGGACAGCGCAGGG
AACCATACGCCATATCCTGTGATAAACCATGAAAATATTTTGAAAAGGAATGTACATATC
TGGATAACTGAAGCAGTGTGTTGTACGGTAGAAATTAACACAGCATTTGAATCAACTCCA
CATTAGTAAAATAAATTTGAAAAAAAGAAATGTATGCATAACAAAACAGAACCTTATGAA
AAAAAAAGATTTAAAAACAGTCCAAGCATTGCTTTCATGGAGACTAAAAACCTCAGACGG
AGACTCTTGTCCATTTTCCAGGCTAAAAAAAACCCATCACTTATTACAGCCCAATAATCG
CAATGCTCTTTTCATTGCTCTTGCTTGCTCTCTCTGGCCTCCCCACAGAGGAGAGAGAGG
GCAGGTAGAAACGTGCATGGACTTGGTCTTGTTCCCTCCGCTGGAGGCTGATTCATCGGT
TTCCCTAGGAGAACCTACGTTAAAGAGGTTAAGTGTCTGCTGGCTCCTTTCATGTTAAAA
ATAAACACCATCACGAAACAGTGGCATTGGTAGGCTTTACCCTCAGATCTCAGAAAGCCA
ACTTCCCATCTCCCTGGAAATCCAAACCAAACAAGATTTTCTCCTGGTATAGGGCCAGAA
GCAGAAGCCAACATAATGCGCCAGCCCTAAGCACGTATTTGTCCCTCCCCTTGGCAGCAT
TCCTGCTGGAGGAGCTGTATAAATATAGGCCTTAATATTTAAAACCTCGGGCCATTAATC
TCCTGCTCGTCCTGCTTCCCCAGCTCACTCTCCGGGCACCCACCCCCTCCCCCGACCAAA
TTCATTTTTAAAGCCCAGCTTGATTATGCAGCCAGATAGTAATTTCAGTGAAAAATGACA
AGTTCAGTCACTGCCCCAACCTATAGCTCTTGCATGATTTAAGTTACTGCTCTAATTTTT
TGTGAAGTCCAGGTAATTTAGAGCGTGGCTGTGTTTTACTGTCCTTTCGCCAGCCCATTG
GAGTTGCCATGATCTGTGCATTCAAAATTCATAAGACCCTCTCAGCCATGGCCTGGGAAG
TGAATTTAATTTTTGATCACTTTTGATGCTCTTGATATTTATTATGATGTCCTCCCCGCC
CCGCTTCAAGGGGATGGTGGCAGGGAAGAGAGACCACTTAAAAATGTTTCCAGCTAACAG
AACTTCAGAAACCCAGACTGTCAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               699-1015, - strand, RNAz p=0.976586

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               699-1015, - strand, RNAz p=0.976586

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               45-309, gnl|bosTau2|chr17 (21718968-21718697)
               


               
               59-260, gnl|bosTau2|chr20 (12581910-12581704)
               


               
               323-1280, gnl|bosTau2|chr20 (559679-560616)
               

               
               323-1280, gnl|Hg17|chr5 (168153954-168153007)
               

               
               323-1280, gnl|Mm7|chr11 (35443894-35444752)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               45-309, gnl|bosTau2|chr17 (21718968-21718697)
               


               
               59-260, gnl|bosTau2|chr20 (12581910-12581704)
               


               
               323-1280, gnl|bosTau2|chr20 (559679-560616)
               

               
               323-1280, gnl|Hg17|chr5 (168153954-168153007)
               

               
               323-1280, gnl|Mm7|chr11 (35443894-35444752)

	45-309, gnl\|bosTau2\|chr17 (21718968-21718697)

	59-260, gnl\|bosTau2\|chr20 (12581910-12581704)

	323-1280, gnl\|bosTau2\|chr20 (559679-560616)
	323-1280, gnl\|Hg17\|chr5 (168153954-168153007)
	323-1280, gnl\|Mm7\|chr11 (35443894-35444752)