Ss1.1-Pig4-TMW8047E20.3
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CAGCCCCGAGCCCCGGGCCGCGCCCGCCGGCCGGCCGCGGGCGGGACCTCGCCGCGGGGG
CTCCAGCGCAGCGGAAGGACGGCTCCCGCGCCCCCGGAGAGCCCCCGCCCCAGCGCCCGT
ATATGGCAAAGTTTCTCGCCAAGCTCCTGGGCTGCACGTTGCCGAGCAAGGGCGCCTCTC
CCATGTTCGAGTCCAAAAGTCACTCCCGAGTTGGCCTGAAATCAAGCACCAAGCAAAAGA
CGGCCATTTTCAGCCCTTTGGCCAGTGAGAAGTCCTTATCTGACTGCAAAAAGACAATGA
GACGCAGCCCACGTAGACCTGAGAGCAGGAGCTGACCAGAAACACTGTTCTTTTCGTAGC
AGAGGAAGCCCCGTCAGTTAAGGATACGGTTGCCCGTGACTCCCGGAATTGAACACCTGA
ACGGAGCTGCAGGAGGAACCTCGGCCCCCAGAACCCAGCCAGGCGGGAGAAGCGGAGTGG
GGAAGCCCTCGTGGGTTGCATGAGCATTTTGGATGCAGCTTTCCTGATGGGTAGCACACC
TGTCATGTTTAATATTTCATCACTGAGGGAGATGTACGTCTGTCTGTGTTCATCTGCCGA
GTGAAAATCCTGCACCCAGGAAGCCTACATGTGGTGAACACGACAGGGCTTCCTCATTTT
GCCCCTAAATCATATTCACAGCAACCGGGAGGAATCCGTACCAGCTGCGAAGCCCCAGCC
GCGGCTCTTCACCCACCAGCGAGCTCCTGGGAGCCCTTTGCCTTTGCTGCTGCGGTGCTG
CTGGGTCTGCCTCTGCCATCACACCAAGGAGGCAGAAGGAAGCCCAGCAGCTGTCCTGTT
GGAAGAGTAGCTGCAGAGACAAAAGACCTAGGGGAACAAATTCCTGGGCAGAATGTCCTA
GGGTGCAGGTGGGAGACTGCGAGGCTCCCGGGAAGTGGAGCTGGTGGAAATGTCCGGGGG
TAAATGAGGCAGAAATCGTAAGTCAGGAGACGGTCCGTATGTGGAACGGCGCGGACCCCA
CGCGTGGAAATTATTTCAGCATTGTCACAAAGCCGAACGAGAAAGATCTGCGTGAATACC
CTAGATTTCCTGCGAAGTCATCTCATGGGGGAAAAAAGTCATGACTCCCTTCCTTAACCC
CTTGTGAAGGTGAACATACGTCCCAGTTTTCTTGGAGGGTTTAAGGTTTATGTCTTTTGT
CCCAGGGTAACCATTACTGCCACCTCTTTTCATTCTCAAAATATCTCAAAGGTGTGAACA
ATAAATGCTAAGATCACCGCCCTA
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Blue-coloured subsequences are predicted RNA structures by RNAz
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CAGCCCCGAGCCCCGGGCCGCGCCCGCCGGCCGGCCGCGGGCGGGACCTCGCCGCGGGGG
CTCCAGCGCAGCGGAAGGACGGCTCCCGCGCCCCCGGAGAGCCCCCGCCCCAGCGCCCGT
ATATGGCAAAGTTTCTCGCCAAGCTCCTGGGCTGCACGTTGCCGAGCAAGGGCGCCTCTC
CCATGTTCGAGTCCAAAAGTCACTCCCGAGTTGGCCTGAAATCAAGCACCAAGCAAAAGA
CGGCCATTTTCAGCCCTTTGGCCAGTGAGAAGTCCTTATCTGACTGCAAAAAGACAATGA
GACGCAGCCCACGTAGACCTGAGAGCAGGAGCTGACCAGAAACACTGTTCTTTTCGTAGC
AGAGGAAGCCCCGTCAGTTAAGGATACGGTTGCCCGTGACTCCCGGAATTGAACACCTGA
ACGGAGCTGCAGGAGGAACCTCGGCCCCCAGAACCCAGCCAGGCGGGAGAAGCGGAGTGG
GGAAGCCCTCGTGGGTTGCATGAGCATTTTGGATGCAGCTTTCCTGATGGGTAGCACACC
TGTCATGTTTAATATTTCATCACTGAGGGAGATGTACGTCTGTCTGTGTTCATCTGCCGA
GTGAAAATCCTGCACCCAGGAAGCCTACATGTGGTGAACACGACAGGGCTTCCTCATTTT
GCCCCTAAATCATATTCACAGCAACCGGGAGGAATCCGTACCAGCTGCGAAGCCCCAGCC
GCGGCTCTTCACCCACCAGCGAGCTCCTGGGAGCCCTTTGCCTTTGCTGCTGCGGTGCTG
CTGGGTCTGCCTCTGCCATCACACCAAGGAGGCAGAAGGAAGCCCAGCAGCTGTCCTGTT
GGAAGAGTAGCTGCAGAGACAAAAGACCTAGGGGAACAAATTCCTGGGCAGAATGTCCTA
GGGTGCAGGTGGGAGACTGCGAGGCTCCCGGGAAGTGGAGCTGGTGGAAATGTCCGGGGG
TAAATGAGGCAGAAATCGTAAGTCAGGAGACGGTCCGTATGTGGAACGGCGCGGACCCCA
CGCGTGGAAATTATTTCAGCATTGTCACAAAGCCGAACGAGAAAGATCTGCGTGAATACC
CTAGATTTCCTGCGAAGTCATCTCATGGGGGAAAAAAGTCATGACTCCCTTCCTTAACCC
CTTGTGAAGGTGAACATACGTCCCAGTTTTCTTGGAGGGTTTAAGGTTTATGTCTTTTGT
CCCAGGGTAACCATTACTGCCACCTCTTTTCATTCTCAAAATATCTCAAAGGTGTGAACA
ATAAATGCTAAGATCACCGCCCTA
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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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751-884, - strand, RNAmicro p=0.999914 |
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768-854, + strand, RNAmicro p=0.993613 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
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751-884, - strand, RNAmicro p=0.999914 |
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768-854, + strand, RNAmicro p=0.993613 |
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380-887, gnl|bosTau2|chr6 (54748321-54747813) |
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380-887, gnl|canFam2|chr32 (8706338-8707384) |
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380-887, gnl|dasNov1|scaffold_64501 (1420-2414) |
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380-887, gnl|echTel1|scaffold_324976 (58132-57083) |
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380-887, gnl|hg17|chr4 (82908843-82909890) |
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380-887, gnl|Hg17|chr4 (82909520-82909010) |
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380-887, gnl|loxAfr1|scaffold_3820 (62170-61131) |
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380-887, gnl|mm7|chr5 (98612617-98613473) |
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380-887, gnl|Mm7|chr5 (98613124-98612674) |
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380-887, gnl|oryCun1|scaffold_209373 (84519-85559) |
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380-887, gnl|panTro1|chr3 (50815698-50814649) |
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380-887, gnl|rn3|chr14 (11517283-11516358) |
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938-1278, gnl|bosTau2|chr6 (54747571-54747228) |
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938-1278, gnl|Hg17|chr4 (82908956-82908154) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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380-887, gnl|bosTau2|chr6 (54748321-54747813) |
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380-887, gnl|canFam2|chr32 (8706338-8707384) |
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380-887, gnl|dasNov1|scaffold_64501 (1420-2414) |
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380-887, gnl|echTel1|scaffold_324976 (58132-57083) |
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380-887, gnl|hg17|chr4 (82908843-82909890) |
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380-887, gnl|Hg17|chr4 (82909520-82909010) |
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380-887, gnl|loxAfr1|scaffold_3820 (62170-61131) |
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380-887, gnl|mm7|chr5 (98612617-98613473) |
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380-887, gnl|Mm7|chr5 (98613124-98612674) |
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380-887, gnl|oryCun1|scaffold_209373 (84519-85559) |
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380-887, gnl|panTro1|chr3 (50815698-50814649) |
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380-887, gnl|rn3|chr14 (11517283-11516358) |
| |
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938-1278, gnl|bosTau2|chr6 (54747571-54747228) |
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938-1278, gnl|Hg17|chr4 (82908956-82908154) |
