Non-Coding RNA Search

Ss1.1-Pig4-TMW8047G23.5

Sequence:


               
               AACCGAGGGTGTCTTGCACAAACCTTACAGCATGCCTCCGCCTTGGTTTAGGAAGGGGCT
TTGCAGTCTGTCCTCTCTGTCATGACCTTCGGACCCCTTCCCTTGCCCAGGACATCTGCC
TGAGAAGCTTGGGTGGTGAAGGAGGTGAAGCTCCAGTGCTGGCTCCCACACTACAATAAA
GATGATCTTGCTTTCTGGTAATCTAATAGATCATCTCAGTCAACCCCTTGCGTGTCACCG
AGGGAGAAGTGTGACACCCATAGCCACTCTCGAAGTCCAGGTCTTCTGACTCCTAACTTG
GGCCTCTTTTTCCCTTAAAACGAAGTGTTCTGATGCCCTTACAGACCTAGCCGTCATTTA
ATTATTGCTGGCTTGCAGGTAACCTTAAATAATAAACAAATTTATTAATAAAGTTCATAG
TAAGAATAATTTAGAGAGTGCTTACTTTTGTACTAGTGAGATTCTGTTACCTTATTTTCT
CATCCTCACACCCCTGTGAAGTAGGAGACTACTAATTATTATTCTAATTTTCATAGATGA
AGAAACAGCCTCAGAGATTTCAAATGACTGGCTCAAAGGTCCCCAGCTAGTAAATGCAGA
ACAGAGACAGAAACTCAGGACTCCAGAGTCTCAGTTGCTAGCCACTATACTATGCTGGTC
CCTAAATGAAAATTAGTTTTTCCCCCAATTAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACCGAGGGTGTCTTGCACAAACCTTACAGCATGCCTCCGCCTTGGTTTAGGAAGGGGCT
TTGCAGTCTGTCCTCTCTGTCATGACCTTCGGACCCCTTCCCTTGCCCAGGACATCTGCC
TGAGAAGCTTGGGTGGTGAAGGAGGTGAAGCTCCAGTGCTGGCTCCCACACTACAATAAA
GATGATCTTGCTTTCTGGTAATCTAATAGATCATCTCAGTCAACCCCTTGCGTGTCACCG
AGGGAGAAGTGTGACACCCATAGCCACTCTCGAAGTCCAGGTCTTCTGACTCCTAACTTG
GGCCTCTTTTTCCCTTAAAACGAAGTGTTCTGATGCCCTTACAGACCTAGCCGTCATTTA
ATTATTGCTGGCTTGCAGGTAACCTTAAATAATAAACAAATTTATTAATAAAGTTCATAG
TAAGAATAATTTAGAGAGTGCTTACTTTTGTACTAGTGAGATTCTGTTACCTTATTTTCT
CATCCTCACACCCCTGTGAAGTAGGAGACTACTAATTATTATTCTAATTTTCATAGATGA
AGAAACAGCCTCAGAGATTTCAAATGACTGGCTCAAAGGTCCCCAGCTAGTAAATGCAGA
ACAGAGACAGAAACTCAGGACTCCAGAGTCTCAGTTGCTAGCCACTATACTATGCTGGTC
CCTAAATGAAAATTAGTTTTTCCCCCAATTAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               5-122, - strand, RNAz p=0.942611

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               5-122, - strand, RNAz p=0.942611

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               41-173, - strand, RNAmicro p=0.999928

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               41-173, - strand, RNAmicro p=0.999928

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-665, gnl|bosTau2|chr7 (7353916-7353256)
               

               
               5-665, gnl|Hg17|chr19 (14501868-14502525)
               

               
               5-665, gnl|Mm7|chr8 (82172475-82171929)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-665, gnl|bosTau2|chr7 (7353916-7353256)
               

               
               5-665, gnl|Hg17|chr19 (14501868-14502525)
               

               
               5-665, gnl|Mm7|chr8 (82172475-82171929)

	5-665, gnl\|bosTau2\|chr7 (7353916-7353256)
	5-665, gnl\|Hg17\|chr19 (14501868-14502525)
	5-665, gnl\|Mm7\|chr8 (82172475-82171929)