Non-Coding RNA Search

Ss1.1-Pig4-TMW8047H08.3

Sequence:


               
               TACGCTTTCCCACTCATGACATGCCTGCTTTTATTCAAATGGGCAGAGATAAAAACTTCT
CGAGTCTCCACACTGTCTTTTGTGCCACTGGAGGTGGAGCGTACAAATTTGAGCAGGATT
TTCTCACAGTATGCATTTTTTAGCTTATATACAATTTATGGTAATCTGATTGTTAGAAAT
AATTCCAACAGCAGGTGGTGGAATCATTTCCATCTCTAATGAAACTTGAATTTTCTTGAG
TCACATTAAGATTGAATATAAATTAGGGATGGGAGTCGCCATCTAGAGATTGTTGTATAG
TTTACTTTTTGGCCCAGTTCGGATGAATTGATGAGAATCACAGCCACTAAGAGCATAGCA
TTTGGTTGTTCTTTTGGTATGAGAAAATCGTCAAGCTGTGGTAAGCAGAGTCAGGAATTC
CCTATGAGGAACAAGATCATTGTCTTGAACAATGAGATTGAAAAATAATTTAAAGAAATT
AATGTCATTTCATGTCGTAAAATTGTTTCCAGTTTTTTCTACCACAGAATTTACCTTATC
CCCCTTATTTTTTTCTTGGAAAGTTTACTATTTTAAAAATACAAGGAACTCTGGTCCAAA
ATGGTGTTTTTCAGGCCTCAGGGCCAGTGAGAGATGGTTGACAGAGTTTCCTCTCCCCAA
ATGCCTTTTGAAATGTTCTGTGCTGCACACTTGTTAACAGGAGTCTGGACACTAGGGGGC
GTAGCAGTGGACACTTGATTTTGTTTTCATTCAGTGAACACTGTGTAAGGCCTTGAGGCT
AGGGCCTTTGAGGGTGGACGTGGGAGTAGATGGGAGAATTGACAAGCGAATTGGCCAACA
CTCACCTTCAGGGTGCAATGTAGATATAAAATATCTTCAGTGACCATGTTTTTAATGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACGCTTTCCCACTCATGACATGCCTGCTTTTATTCAAATGGGCAGAGATAAAAACTTCT
CGAGTCTCCACACTGTCTTTTGTGCCACTGGAGGTGGAGCGTACAAATTTGAGCAGGATT
TTCTCACAGTATGCATTTTTTAGCTTATATACAATTTATGGTAATCTGATTGTTAGAAAT
AATTCCAACAGCAGGTGGTGGAATCATTTCCATCTCTAATGAAACTTGAATTTTCTTGAG
TCACATTAAGATTGAATATAAATTAGGGATGGGAGTCGCCATCTAGAGATTGTTGTATAG
TTTACTTTTTGGCCCAGTTCGGATGAATTGATGAGAATCACAGCCACTAAGAGCATAGCA
TTTGGTTGTTCTTTTGGTATGAGAAAATCGTCAAGCTGTGGTAAGCAGAGTCAGGAATTC
CCTATGAGGAACAAGATCATTGTCTTGAACAATGAGATTGAAAAATAATTTAAAGAAATT
AATGTCATTTCATGTCGTAAAATTGTTTCCAGTTTTTTCTACCACAGAATTTACCTTATC
CCCCTTATTTTTTTCTTGGAAAGTTTACTATTTTAAAAATACAAGGAACTCTGGTCCAAA
ATGGTGTTTTTCAGGCCTCAGGGCCAGTGAGAGATGGTTGACAGAGTTTCCTCTCCCCAA
ATGCCTTTTGAAATGTTCTGTGCTGCACACTTGTTAACAGGAGTCTGGACACTAGGGGGC
GTAGCAGTGGACACTTGATTTTGTTTTCATTCAGTGAACACTGTGTAAGGCCTTGAGGCT
AGGGCCTTTGAGGGTGGACGTGGGAGTAGATGGGAGAATTGACAAGCGAATTGGCCAACA
CTCACCTTCAGGGTGCAATGTAGATATAAAATATCTTCAGTGACCATGTTTTTAATGCCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-119, - strand, RNAz p=0.66034

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.66034

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-644, gnl|bosTau2|chr13 (33894003-33894629)
               

               
               1-644, gnl|Hg17|chr20 (3836798-3837406)
               


               
               647-899, gnl|bosTau2|chr13 (33894847-33895100)
               

               
               647-899, gnl|Hg17|chr20 (3837426-3837695)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-644, gnl|bosTau2|chr13 (33894003-33894629)
               

               
               1-644, gnl|Hg17|chr20 (3836798-3837406)
               


               
               647-899, gnl|bosTau2|chr13 (33894847-33895100)
               

               
               647-899, gnl|Hg17|chr20 (3837426-3837695)

	1-644, gnl\|bosTau2\|chr13 (33894003-33894629)
	1-644, gnl\|Hg17\|chr20 (3836798-3837406)

	647-899, gnl\|bosTau2\|chr13 (33894847-33895100)
	647-899, gnl\|Hg17\|chr20 (3837426-3837695)