Non-Coding RNA Search

Ss1.1-Pig4-TMW8047H22.5

Sequence:


               
               AAAAAAAGAAAAGAAACAAAATCACCCCCACCTCTTCTAGCCCCAATGTCCTGGGGTGGT
TCTGTTTCTTCATTAATAGAGTGGCTTAGACCATTAGGTTATCATTCTAAAGACTCATGG
TGGGTGCATGGCATGTGGGTATAGAAGGGGCAGAAGCCAGACCACATGTATTGGTAGCAG
GACTACCCTGCAGTTGTAGTTCTCAGTAGATCCCCGACAGTGATCATATGTTCAGTGATG
CACCTCCTCTTCCTAAAAGTAGAGAAAGCACAGTTAAAAGTGAAAAGAAGAGCAAACTGT
TCTAACTTTACTTAGCAGAATGAGGAATTCAGAAGTGGGAGCCAGGTTTTTGCTGAGAAT
CTCAGTAGAAAAATGACTCTAGGAATCAAATAATTCTAAGAACTAATTATATAAAAGTAT
TTTGCAAACTATAAAGTGATATTCAAATGTGTTACAAAGTATTAACTCCATGTATTTTAG
CGACATTTGAAAGACTTCCAGAAAATAAACTGCCAGTGCTGGAAAAAACCTGATCTACCT
AACCCAGGACTGTTGTCTTGGCCTTAAAGGAAGTTTTATGTGAAAGCAGAGGAAACTGTA
AGATAACTCTTTAATCTGGATACTTGTCTAAACCATAAGTCACATTTTTAAATGTATGTA
TGTTTTCTTGGTTAGAAAAAAATGAAGGAGGAACTCCTGAGTGGCCTAGTGGTTAAGGAT
CTGGTGTTGTTACTTCTGTGGCTTGGGTCACTGCTTGGCCAGGGATCAAACCTGTGCCAC
AGCAGCAACCTGAGCTGAAGCAGTGATGCTGAACCCTTAATCCATTGCACCACAAAGGAA
CTCCCCTAGGTTTTCTTTCTTACCCCCAAATTATATAAATCATATACATATTTTCTAAAT
TTTCAAAGTTTAGCTCTTTATATCATCTGAAATATACTTCTCTGGTGTGAGAAGACCACA
CCATATAACTTTTTCCAAATGGATACTTGATGGTTGTAAAAATAATTTGCTAAATAATGA
GATCTTACTGCTCTGTTCTGAAGTGCTACCTCTAGCCTATATTAAATTCACATGTGTAAT
TTGTTTCTGGCATCTTCTTTTCCTTTGATCCTTTTCTCTATTCCTGAACCAGTTACCAAT
ACTAGACTGTGTAATTGCTCCAGTTTTAGAATATGTTTTTTTATATTTGCTTGGGCAAGA
CCTCCCTAATTATATTCCTTCTTAAATGAGTTCTTGGCAATTCACCTTCATTTATTCTTC
CAGATAAAATTTAGGATCAACATGTCTAAGTTCCAAAACAAAATCTCTTTAGAACTGAGA
TTGCAGTTGGATAGACTCAATGTAGAGCAATTTGAGAAGGTGAACATTTTTATAGCCAAG
TCTTTTTATCCATAAACATTGTGACCGTCTCCATCAGCTCTTTTAGGACCTTAAATAAAT
CCTGTTTTTTCATACATGGTATTTTGTAACTTTTGCTCCTGGTTTGAATGGAATCTTTTC
TATAACATTGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAGAAAAGAAACAAAATCACCCCCACCTCTTCTAGCCCCAATGTCCTGGGGTGGT
TCTGTTTCTTCATTAATAGAGTGGCTTAGACCATTAGGTTATCATTCTAAAGACTCATGG
TGGGTGCATGGCATGTGGGTATAGAAGGGGCAGAAGCCAGACCACATGTATTGGTAGCAG
GACTACCCTGCAGTTGTAGTTCTCAGTAGATCCCCGACAGTGATCATATGTTCAGTGATG
CACCTCCTCTTCCTAAAAGTAGAGAAAGCACAGTTAAAAGTGAAAAGAAGAGCAAACTGT
TCTAACTTTACTTAGCAGAATGAGGAATTCAGAAGTGGGAGCCAGGTTTTTGCTGAGAAT
CTCAGTAGAAAAATGACTCTAGGAATCAAATAATTCTAAGAACTAATTATATAAAAGTAT
TTTGCAAACTATAAAGTGATATTCAAATGTGTTACAAAGTATTAACTCCATGTATTTTAG
CGACATTTGAAAGACTTCCAGAAAATAAACTGCCAGTGCTGGAAAAAACCTGATCTACCT
AACCCAGGACTGTTGTCTTGGCCTTAAAGGAAGTTTTATGTGAAAGCAGAGGAAACTGTA
AGATAACTCTTTAATCTGGATACTTGTCTAAACCATAAGTCACATTTTTAAATGTATGTA
TGTTTTCTTGGTTAGAAAAAAATGAAGGAGGAACTCCTGAGTGGCCTAGTGGTTAAGGAT
CTGGTGTTGTTACTTCTGTGGCTTGGGTCACTGCTTGGCCAGGGATCAAACCTGTGCCAC
AGCAGCAACCTGAGCTGAAGCAGTGATGCTGAACCCTTAATCCATTGCACCACAAAGGAA
CTCCCCTAGGTTTTCTTTCTTACCCCCAAATTATATAAATCATATACATATTTTCTAAAT
TTTCAAAGTTTAGCTCTTTATATCATCTGAAATATACTTCTCTGGTGTGAGAAGACCACA
CCATATAACTTTTTCCAAATGGATACTTGATGGTTGTAAAAATAATTTGCTAAATAATGA
GATCTTACTGCTCTGTTCTGAAGTGCTACCTCTAGCCTATATTAAATTCACATGTGTAAT
TTGTTTCTGGCATCTTCTTTTCCTTTGATCCTTTTCTCTATTCCTGAACCAGTTACCAAT
ACTAGACTGTGTAATTGCTCCAGTTTTAGAATATGTTTTTTTATATTTGCTTGGGCAAGA
CCTCCCTAATTATATTCCTTCTTAAATGAGTTCTTGGCAATTCACCTTCATTTATTCTTC
CAGATAAAATTTAGGATCAACATGTCTAAGTTCCAAAACAAAATCTCTTTAGAACTGAGA
TTGCAGTTGGATAGACTCAATGTAGAGCAATTTGAGAAGGTGAACATTTTTATAGCCAAG
TCTTTTTATCCATAAACATTGTGACCGTCTCCATCAGCTCTTTTAGGACCTTAAATAAAT
CCTGTTTTTTCATACATGGTATTTTGTAACTTTTGCTCCTGGTTTGAATGGAATCTTTTC
TATAACATTGCG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               59-177, - strand, RNAz p=0.564393
               

               
               255-373, + strand, RNAz p=0.525094

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               59-177, - strand, RNAz p=0.564393
               

               
               255-373, + strand, RNAz p=0.525094

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               59-497, gnl|bosTau2|chr10 (38159389-38158962)
               

               
               59-497, gnl|Hg17|chr15 (57425869-57425436)
               


               
               850-1460, gnl|bosTau2|chr10 (38160445-38159825)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               59-497, gnl|bosTau2|chr10 (38159389-38158962)
               

               
               59-497, gnl|Hg17|chr15 (57425869-57425436)
               


               
               850-1460, gnl|bosTau2|chr10 (38160445-38159825)

	59-177, - strand, RNAz p=0.564393
	255-373, + strand, RNAz p=0.525094

	59-497, gnl\|bosTau2\|chr10 (38159389-38158962)
	59-497, gnl\|Hg17\|chr15 (57425869-57425436)

	850-1460, gnl\|bosTau2\|chr10 (38160445-38159825)