Non-Coding RNA Search

Ss1.1-Pig4-TMW8047J04.3

Sequence:


               
               GTGGGGAGAAGAGAATAACGTAGAATCTTCCGCTGGCTGCCTTTGGACAAGGCCCAGGAA
TGACACCTGGTACCGTTTTTTGATGTTTCATTTTTTTTTTTTTTTTCTGATGGAGCGGTC
TCATCTGGGGATTGTAGATAGATTGCACATATTTACCCAACGTGTGGAAGCTGGGTGATC
ATTTTACAAGAAAATTCATTTCACGGTGTCCCCAGAAAGTTCATATTTTAAAGGGTTATT
TTTATTCTAAACAAAGAATGTCCTGCTTTGATCTTGTGACACTGCCTGTCCTGTGCCTTC
CTCATCTGCTGTTTTACACTTGTCAATCTTCTGCATCTGAAATGCACGTTCCCAGTCACA
GTGTGTTGGAAAAGCACATTTCAGTGAAATATTTTGGTGCCTTTCAGTGTTAGGGGTGCC
AAGTGAAATTGCACATGCTGAGAATATTAGAACCTAACAAGGCCAGTCAGAAAATGATGT
CAGAGGCCTTTGGTGGAAATTGGGGGGAGGGGGGTATCTTAGGTTGGTTGGTTAGAATAG
TAATGACTGGAAACCTAGTGTCAGGTGGGTGGGAGGGGGAGGGTCACTAAACAAGACCAG
AAGAGACAAAACCTCCACTGTGACGGCATCTGGATTGTGCCAAAGAAATGAACTGTTAAA
CTTTCCTGTTTCCGTGCCAGTTGTGGAGAATAGATTGCAAACCGACCAGCATAGAACTTG
GCCTGAGTCAGAAGTGGGCCAGTTACTAACACCACAATGGGACAGCTTCACGAACAGTCT
GAAAGCCCCACACTTCCCACCAAACCTTCATAGAAAAGTAAACCTAGAGAAACCTACCAA
CATTGTGAACATTCCTAAGTGTCTGCCCTGTTAACTTTGATGCTCATTTGGTTATTACTA
GTGCAAACCCCCATGTTTATTTAGTATTGCTTTTAAAGAGAAAGTAGTGAAAATGTAAAT
GTTTTCCATCTTTACCTGGCTGGTCAAAAATAATCTTGTAAAAGTTATTACTCAAAAGTA
TAAAAAAAAATGTTCCGGTAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGGGAGAAGAGAATAACGTAGAATCTTCCGCTGGCTGCCTTTGGACAAGGCCCAGGAA
TGACACCTGGTACCGTTTTTTGATGTTTCATTTTTTTTTTTTTTTTCTGATGGAGCGGTC
TCATCTGGGGATTGTAGATAGATTGCACATATTTACCCAACGTGTGGAAGCTGGGTGATC
ATTTTACAAGAAAATTCATTTCACGGTGTCCCCAGAAAGTTCATATTTTAAAGGGTTATT
TTTATTCTAAACAAAGAATGTCCTGCTTTGATCTTGTGACACTGCCTGTCCTGTGCCTTC
CTCATCTGCTGTTTTACACTTGTCAATCTTCTGCATCTGAAATGCACGTTCCCAGTCACA
GTGTGTTGGAAAAGCACATTTCAGTGAAATATTTTGGTGCCTTTCAGTGTTAGGGGTGCC
AAGTGAAATTGCACATGCTGAGAATATTAGAACCTAACAAGGCCAGTCAGAAAATGATGT
CAGAGGCCTTTGGTGGAAATTGGGGGGAGGGGGGTATCTTAGGTTGGTTGGTTAGAATAG
TAATGACTGGAAACCTAGTGTCAGGTGGGTGGGAGGGGGAGGGTCACTAAACAAGACCAG
AAGAGACAAAACCTCCACTGTGACGGCATCTGGATTGTGCCAAAGAAATGAACTGTTAAA
CTTTCCTGTTTCCGTGCCAGTTGTGGAGAATAGATTGCAAACCGACCAGCATAGAACTTG
GCCTGAGTCAGAAGTGGGCCAGTTACTAACACCACAATGGGACAGCTTCACGAACAGTCT
GAAAGCCCCACACTTCCCACCAAACCTTCATAGAAAAGTAAACCTAGAGAAACCTACCAA
CATTGTGAACATTCCTAAGTGTCTGCCCTGTTAACTTTGATGCTCATTTGGTTATTACTA
GTGCAAACCCCCATGTTTATTTAGTATTGCTTTTAAAGAGAAAGTAGTGAAAATGTAAAT
GTTTTCCATCTTTACCTGGCTGGTCAAAAATAATCTTGTAAAAGTTATTACTCAAAAGTA
TAAAAAAAAATGTTCCGGTAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               3-121, - strand, RNAz p=0.78827

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-121, - strand, RNAz p=0.78827

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-1029, gnl|bosTau2|chr17 (21049984-21051034)
               

               
               3-1029, gnl|Hg17|chr4 (160384142-160385174)
               

               
               3-1029, gnl|Mm7|chr3 (79390491-79389399)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1029, gnl|bosTau2|chr17 (21049984-21051034)
               

               
               3-1029, gnl|Hg17|chr4 (160384142-160385174)
               

               
               3-1029, gnl|Mm7|chr3 (79390491-79389399)

	3-1029, gnl\|bosTau2\|chr17 (21049984-21051034)
	3-1029, gnl\|Hg17\|chr4 (160384142-160385174)
	3-1029, gnl\|Mm7\|chr3 (79390491-79389399)