Non-Coding RNA Search

Ss1.1-Pig4-TMW8047N21.3.5

Sequence:


               
               GCGGCAGGTGAGCCGTCCGCCAGCCCCGGACGAGGAGCCCTCCCCTGCTGCCAGCTGCAG
CCTAGCAGCAGCCCAGGGTTCAGAGACGCAGGACTTCCAGGAGTTCATTGCCGAGAATGA
GACGGCAGTGATGCACCTGCAGAGCGCGGAGGAACTGGAGCGGCTCAAGGCGGAGGAGGA
CTCCAGCGGCTCCAGTGCCAGCCTGGACTCCAGCATAGAGAGCCTGGGTGTGTGCATCCT
GGAGGAGCCGCTGGCTGTCCCCGAAGAGCTGTGCCCGGGCCTCACAGCCCCCATTCTCAT
CCAGGCTCAGCTGCCCCCCGGTTCCTCCGTGCTGTGTTTTGCCGAGAACTCGGACCACCC
GACCGCCTCGGCCGTGAACAGCCCATCCTACTTGAACAGTGGGCCCCTGGTCTATTACCA
GGTGGAGCAGAGGCCAGTCCTGGGGGTGAAGGGAGAGCCTGGTACAGAAGAAGGCCCCCC
CGCGTTCCCCAAGGAGAAGGATCTGGGTGTCTTCTCCCTCCCCGTTACCTCACTGGTGGC
CTGTAGCCCCGCAGACCCGGCTGCCCTCTGTAAGACAGAAGTGGGGAAACCGTCCACTCT
AGAAGCGCTAGTGCCGGAAGATTGTAACCCCGAGGAGGCTGAGAATGAAGACTTCCGCCC
CTCGTGGTCCCCCTCAAGCCTCCCCTTCCGCACGGACAATGACGAGGGCTGCGTGGCGGA
GAAGGCCGCACAGCAGAGCGAGGGCCGGCCCCCTGAAGAGCCTTCCCCGGAGCTCCCTCT
GGCAGTGTGACACGGGGATGGAGAGTCTGCCTCTTACCCCCTCTATTTATTCCCTTATTT
TATCTAACGCCATTTCAAAACAAACTGTAGAAGCAGCTGCTGCTCCCATGTTATTTTATT
GGGGTCTCTGGGGAACAGGTGGGAAAGGATTGTTCATACAAGTATTTTCTAAAGGGCGAA
CAGAACCAAGGAGACCAGCCCCGGCTCGATCTGGGGACAGAGTCTTGGGGCAGAGGAGGC
TGCATACTGAGCCTTCTGGGCCTTTGGAACAAAGAACTAGGATCTCGCGGGAGAAGCTGG
GTAATTCAAGCAGCTATTCACTAGGGACCAGAACATGACAATTTGGATGGCGTGGCAAAG
CCCCTTCCCCTCTCCTGCGCTCCAGGCGGGGTTCGAGCTCATTTTCCTCGGTGGTTCCTC
CGAGAGCCCACTTCGGTGTATCGTAATAATACAGCTGGAATCTAGCGAGGAGGGGGTGGA
AGGGTCTCTGCTTCTGTACAAAACCTCCAGGATTTATAAAAACTTGACCTGGCTTCCCTG
GCCCCCTATTTGGTAAATAAGTTAATATTTGACATGTTTGGTGTTTTCTGACCTGTTCCC
CACACTGGGGATTCCTGGTCTGTAACTTGAATTGTTTTTCACATGTTCTTAGGTACTAGA
GTTAAACTTGGCTTTTGTCTCCACCCCCATCCCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCAGGTGAGCCGTCCGCCAGCCCCGGACGAGGAGCCCTCCCCTGCTGCCAGCTGCAG
CCTAGCAGCAGCCCAGGGTTCAGAGACGCAGGACTTCCAGGAGTTCATTGCCGAGAATGA
GACGGCAGTGATGCACCTGCAGAGCGCGGAGGAACTGGAGCGGCTCAAGGCGGAGGAGGA
CTCCAGCGGCTCCAGTGCCAGCCTGGACTCCAGCATAGAGAGCCTGGGTGTGTGCATCCT
GGAGGAGCCGCTGGCTGTCCCCGAAGAGCTGTGCCCGGGCCTCACAGCCCCCATTCTCAT
CCAGGCTCAGCTGCCCCCCGGTTCCTCCGTGCTGTGTTTTGCCGAGAACTCGGACCACCC
GACCGCCTCGGCCGTGAACAGCCCATCCTACTTGAACAGTGGGCCCCTGGTCTATTACCA
GGTGGAGCAGAGGCCAGTCCTGGGGGTGAAGGGAGAGCCTGGTACAGAAGAAGGCCCCCC
CGCGTTCCCCAAGGAGAAGGATCTGGGTGTCTTCTCCCTCCCCGTTACCTCACTGGTGGC
CTGTAGCCCCGCAGACCCGGCTGCCCTCTGTAAGACAGAAGTGGGGAAACCGTCCACTCT
AGAAGCGCTAGTGCCGGAAGATTGTAACCCCGAGGAGGCTGAGAATGAAGACTTCCGCCC
CTCGTGGTCCCCCTCAAGCCTCCCCTTCCGCACGGACAATGACGAGGGCTGCGTGGCGGA
GAAGGCCGCACAGCAGAGCGAGGGCCGGCCCCCTGAAGAGCCTTCCCCGGAGCTCCCTCT
GGCAGTGTGACACGGGGATGGAGAGTCTGCCTCTTACCCCCTCTATTTATTCCCTTATTT
TATCTAACGCCATTTCAAAACAAACTGTAGAAGCAGCTGCTGCTCCCATGTTATTTTATT
GGGGTCTCTGGGGAACAGGTGGGAAAGGATTGTTCATACAAGTATTTTCTAAAGGGCGAA
CAGAACCAAGGAGACCAGCCCCGGCTCGATCTGGGGACAGAGTCTTGGGGCAGAGGAGGC
TGCATACTGAGCCTTCTGGGCCTTTGGAACAAAGAACTAGGATCTCGCGGGAGAAGCTGG
GTAATTCAAGCAGCTATTCACTAGGGACCAGAACATGACAATTTGGATGGCGTGGCAAAG
CCCCTTCCCCTCTCCTGCGCTCCAGGCGGGGTTCGAGCTCATTTTCCTCGGTGGTTCCTC
CGAGAGCCCACTTCGGTGTATCGTAATAATACAGCTGGAATCTAGCGAGGAGGGGGTGGA
AGGGTCTCTGCTTCTGTACAAAACCTCCAGGATTTATAAAAACTTGACCTGGCTTCCCTG
GCCCCCTATTTGGTAAATAAGTTAATATTTGACATGTTTGGTGTTTTCTGACCTGTTCCC
CACACTGGGGATTCCTGGTCTGTAACTTGAATTGTTTTTCACATGTTCTTAGGTACTAGA
GTTAAACTTGGCTTTTGTCTCCACCCCCATCCCCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61825829|ref|XP_595087.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61825829|ref|XP_595087.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-239, + strand, RNAz p=0.987234

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-239, + strand, RNAz p=0.987234

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-239, gnl|bosTau2|chr2 (54152814-54153052)
               

               
               1-239, gnl|Hg17|chr12 (49744585-49744347)
               

               
               1-239, gnl|Mm7|chr15 (100467811-100467597)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-239, gnl|bosTau2|chr2 (54152814-54153052)
               

               
               1-239, gnl|Hg17|chr12 (49744585-49744347)
               

               
               1-239, gnl|Mm7|chr15 (100467811-100467597)

	1-239, gnl\|bosTau2\|chr2 (54152814-54153052)
	1-239, gnl\|Hg17\|chr12 (49744585-49744347)
	1-239, gnl\|Mm7\|chr15 (100467811-100467597)