Non-Coding RNA Search

Ss1.1-Pig4-TMW8047O24.3

Sequence:


               
               GGCCGCGGCTCG------------TGAGGCCAGGGGTCAAACCCTCATCCTCATGGATGC
TAGTCGGGTTTGCTAACCACTGAACCATGACAGGAACTCCAGTAAACACGATTTGAGAAC
ATAATTTCCTTGGCCCTAGTACTCAAATTATAGGAATTTGGTGTCCTTATGTTTCCTGCA
TAAACTGAAAGTCTCATTAGAAACATACTGTTCTTAAGATTTTTGGGGAAAATTGTAAGA
CTTTGGGTTCACATGAATAATTTCTAGAAATTCTCAAGTGGTTTCTCCCTAAAGCAATGT
TATTTTCAGTTTCTCCTTACAAAGATATGTTAAATTAACATTCGCTAGTTAATTCACTGG
AGTTGTAGCGTACCATATTTACATAAATTCAACTGTGTGAGCATGTTGAAGGGAAAATTT
ATTTGAATAGTGGGGAGGATTCTATTCATTATTTTTCTCAAATGAACATATACCCTGGAG
TAATAGCTTTTGTGAAAAAGTACAATACTATTTTATAGGCATTTGAGAGTTTTTCAGAGA
AAATTTGCCTATATGTGCTCTCTCCTTACTAACTTCAGTGCCCAGATCTTAAATCTTGAG
TCCCATATGTGATACCCTCTTCTTTCTCCAAAAACGATGTTTTCATTGAATTCAAATCTT
TGTTTCCTTTATACTATTTATCCACCCAAGTAAACCATTCTTTTGATTTACAAGATTAAT
TTCTCCTTTTTTAGCATGTTTCTAGTCAGATTCCATGTGCTCAGAGAATGTAGACTGTTT
GCTAGTATAATATTTAAGATGTAGTTATAACATAAATCAGTGCCAATAAAATGATATATT
GCATTCCTCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCGCGGCTCG------------TGAGGCCAGGGGTCAAACCCTCATCCTCATGGATGC
TAGTCGGGTTTGCTAACCACTGAACCATGACAGGAACTCCAGTAAACACGATTTGAGAAC
ATAATTTCCTTGGCCCTAGTACTCAAATTATAGGAATTTGGTGTCCTTATGTTTCCTGCA
TAAACTGAAAGTCTCATTAGAAACATACTGTTCTTAAGATTTTTGGGGAAAATTGTAAGA
CTTTGGGTTCACATGAATAATTTCTAGAAATTCTCAAGTGGTTTCTCCCTAAAGCAATGT
TATTTTCAGTTTCTCCTTACAAAGATATGTTAAATTAACATTCGCTAGTTAATTCACTGG
AGTTGTAGCGTACCATATTTACATAAATTCAACTGTGTGAGCATGTTGAAGGGAAAATTT
ATTTGAATAGTGGGGAGGATTCTATTCATTATTTTTCTCAAATGAACATATACCCTGGAG
TAATAGCTTTTGTGAAAAAGTACAATACTATTTTATAGGCATTTGAGAGTTTTTCAGAGA
AAATTTGCCTATATGTGCTCTCTCCTTACTAACTTCAGTGCCCAGATCTTAAATCTTGAG
TCCCATATGTGATACCCTCTTCTTTCTCCAAAAACGATGTTTTCATTGAATTCAAATCTT
TGTTTCCTTTATACTATTTATCCACCCAAGTAAACCATTCTTTTGATTTACAAGATTAAT
TTCTCCTTTTTTAGCATGTTTCTAGTCAGATTCCATGTGCTCAGAGAATGTAGACTGTTT
GCTAGTATAATATTTAAGATGTAGTTATAACATAAATCAGTGCCAATAAAATGATATATT
GCATTCCTCAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               148-239, - strand, RNAz p=0.938984

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               148-239, - strand, RNAz p=0.938984

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               99-622, gnl|bosTau2|chr2 (31719592-31720126)
               

               
               99-622, gnl|Hg17|chr2 (148584863-148583757)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               99-622, gnl|bosTau2|chr2 (31719592-31720126)
               

               
               99-622, gnl|Hg17|chr2 (148584863-148583757)

	99-622, gnl\|bosTau2\|chr2 (31719592-31720126)
	99-622, gnl\|Hg17\|chr2 (148584863-148583757)