Non-Coding RNA Search

Ss1.1-Pig4-TMW8048A08.3

Sequence:


               
               CCACATCTGAGTCCGCTGGTAATGGAGGGAGCAAGTATAGCCAGGAGGTGATGCACAGCC
TGAGCATTATGCGGATTGCAATGCAAGGGGAGGGGAAGTTTATTTTTGTTGGAACTCTGA
AGATGGGTCACCGTCACCAATATCAGGAGGAGATGATCCAGCGCTACCTTTCTGATGCCG
AGGAGAGATTCCTGGCAGAGCAGAAGCAGAAGGAGGCAGAGAGGAAGATCATGAATGGAG
GGGTAGGGAGTGGGCCTCCTCCAGCCAAGAAGCCAGAGCCAGATGGCGGGGAGGAGCTGC
TGACTGCCCCTCCAGCAGAATCCAAGGCAATGGCATTCTCTACTGGCTACCCTGGTGGCT
TTACCATCCCTCGGCCTTCTGTGGGTGGAGTCCACTGCCAGGAACCCCGGAGGCAGTTGG
CAGGGGGGCCGTGTGTGGGGGGCCTACCACCGTATGCCACCTTCCCCAGACAATGCCCGC
CTGGGCGACCCTACTCCCATCAGGACAACATCCCTTCTCTGGAGCCAGGCAGTCACTCCA
AGGATGGAGTTCACAGGGCTGCATTGCTACCCCCTCACTTCCGCGTGGCTGATTCCTATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACATCTGAGTCCGCTGGTAATGGAGGGAGCAAGTATAGCCAGGAGGTGATGCACAGCC
TGAGCATTATGCGGATTGCAATGCAAGGGGAGGGGAAGTTTATTTTTGTTGGAACTCTGA
AGATGGGTCACCGTCACCAATATCAGGAGGAGATGATCCAGCGCTACCTTTCTGATGCCG
AGGAGAGATTCCTGGCAGAGCAGAAGCAGAAGGAGGCAGAGAGGAAGATCATGAATGGAG
GGGTAGGGAGTGGGCCTCCTCCAGCCAAGAAGCCAGAGCCAGATGGCGGGGAGGAGCTGC
TGACTGCCCCTCCAGCAGAATCCAAGGCAATGGCATTCTCTACTGGCTACCCTGGTGGCT
TTACCATCCCTCGGCCTTCTGTGGGTGGAGTCCACTGCCAGGAACCCCGGAGGCAGTTGG
CAGGGGGGCCGTGTGTGGGGGGCCTACCACCGTATGCCACCTTCCCCAGACAATGCCCGC
CTGGGCGACCCTACTCCCATCAGGACAACATCCCTTCTCTGGAGCCAGGCAGTCACTCCA
AGGATGGAGTTCACAGGGCTGCATTGCTACCCCCTCACTTCCGCGTGGCTGATTCCTATA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-359, + strand, RNAz p=0.95702

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-359, + strand, RNAz p=0.95702

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               186-572, - strand, RNAmicro p=0.999995
               

               
               223-323, + strand, RNAmicro p=0.999829

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               186-572, - strand, RNAmicro p=0.999995
               

               
               223-323, + strand, RNAmicro p=0.999829

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               145-355, UI-H-BI4-app-e-09-0-UI.s1 NCI_CGAP_Sub8 Homo sapiens cDNA clone 
(gb|BF511461.1|), blast E-value=0, identity=89.57% 
               

               
               145-355, NISC_gj01b08.x1 NCI_CGAP_Pr28 Homo sapiens cDNA clone IMAGE 
(gb|CB047819.1|), blast E-value=0, identity=89.57% 
               

               
               145-355, NISC_gj22h04.x1 NCI_CGAP_Pr28 Homo sapiens cDNA clone IMAGE 
(gb|CB051188.1|), blast E-value=0, identity=89.15% 
               

               
               145-355, NISC_gj22h04.y1 NCI_CGAP_Pr28 Homo sapiens cDNA clone IMAGE 
(gb|CB051189.1|), blast E-value=0, identity=89.57% 
               

               
               120-295, UI-M-HJ0-cmi-a-08-0-UI.r1 NIH_BMAP_HJ0 Mus musculus cDNA clone 
(gb|CK782100.1|), blast E-value=0, identity=90.34% 
               

               
               120-355, 17000532546124 GRN_EB Homo sapiens cDNA 5', mRNA sequence 
(gb|CN428698.1|), blast E-value=0, identity=90.25%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               145-355, UI-H-BI4-app-e-09-0-UI.s1 NCI_CGAP_Sub8 Homo sapiens cDNA clone 
(gb|BF511461.1|), blast E-value=0, identity=89.57% 
               

               
               145-355, NISC_gj01b08.x1 NCI_CGAP_Pr28 Homo sapiens cDNA clone IMAGE 
(gb|CB047819.1|), blast E-value=0, identity=89.57% 
               

               
               145-355, NISC_gj22h04.x1 NCI_CGAP_Pr28 Homo sapiens cDNA clone IMAGE 
(gb|CB051188.1|), blast E-value=0, identity=89.15% 
               

               
               145-355, NISC_gj22h04.y1 NCI_CGAP_Pr28 Homo sapiens cDNA clone IMAGE 
(gb|CB051189.1|), blast E-value=0, identity=89.57% 
               

               
               120-295, UI-M-HJ0-cmi-a-08-0-UI.r1 NIH_BMAP_HJ0 Mus musculus cDNA clone 
(gb|CK782100.1|), blast E-value=0, identity=90.34% 
               

               
               120-355, 17000532546124 GRN_EB Homo sapiens cDNA 5', mRNA sequence 
(gb|CN428698.1|), blast E-value=0, identity=90.25%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-600, gnl|bosTau2|chr3 (17532175-17532774)
               

               
               1-600, gnl|Hg17|chr1 (146729634-146729035)
               

               
               1-600, gnl|Mm7|chr3 (96029125-96029712)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-600, gnl|bosTau2|chr3 (17532175-17532774)
               

               
               1-600, gnl|Hg17|chr1 (146729634-146729035)
               

               
               1-600, gnl|Mm7|chr3 (96029125-96029712)

	186-572, - strand, RNAmicro p=0.999995
	223-323, + strand, RNAmicro p=0.999829

	145-355, UI-H-BI4-app-e-09-0-UI.s1 NCI_CGAP_Sub8 Homo sapiens cDNA clone (gb\|BF511461.1\|), blast E-value=0, identity=89.57%
	145-355, NISC_gj01b08.x1 NCI_CGAP_Pr28 Homo sapiens cDNA clone IMAGE (gb\|CB047819.1\|), blast E-value=0, identity=89.57%
	145-355, NISC_gj22h04.x1 NCI_CGAP_Pr28 Homo sapiens cDNA clone IMAGE (gb\|CB051188.1\|), blast E-value=0, identity=89.15%
	145-355, NISC_gj22h04.y1 NCI_CGAP_Pr28 Homo sapiens cDNA clone IMAGE (gb\|CB051189.1\|), blast E-value=0, identity=89.57%
	120-295, UI-M-HJ0-cmi-a-08-0-UI.r1 NIH_BMAP_HJ0 Mus musculus cDNA clone (gb\|CK782100.1\|), blast E-value=0, identity=90.34%
	120-355, 17000532546124 GRN_EB Homo sapiens cDNA 5', mRNA sequence (gb\|CN428698.1\|), blast E-value=0, identity=90.25%

	1-600, gnl\|bosTau2\|chr3 (17532175-17532774)
	1-600, gnl\|Hg17\|chr1 (146729634-146729035)
	1-600, gnl\|Mm7\|chr3 (96029125-96029712)