Non-Coding RNA Search

Ss1.1-Pig4-TMW8048B06.5

Sequence:


               
               GATTTAAATCCCAGTTCTTTAGCATGCTCTCAGCTTCAGAATTATGATCCTGACAGAGCC
CTGACAGATTATATCACTCGGCTAGAGGCGCTACAAAGACGGCTTGGAACTGTACAGTCA
GGTACCCTCAGCTTAACCAAGTACTGGCAGCACCATGGTGCTAGATAGACCCAGAACTCT
TTCTTTTCTTGAAATTCCTTGACCTTCCTCATTAGGACAATCAAATCTTAAACTTGAGTA
TGAGTTACCAAGCTAGATTTAGGAATTTAAGCCAAAACTTGATTTATCACCCTGGATCCC
ACTCTCCTGCTTATCTCATTAAGACAATTGATTAGGTGAAGTACATGATGAGCATCTATG
TACAAAGTACTCTGAGACACACAGAGTTTCTGCTGGAGAATTTGCTGCCAAGTGATACAT
GCTGAGGCATCCAAATAAGAGCTGGGGAGATGAGAGGAGGAAGCAAGTGCTTTTTATATG
TGATCCAAGAAATCCATCCTATTCAAAGGACTGTGCAAGAATGACCTTTTATTGTCTCTG
CTAAAAACAAAAAAAAACAGGAAAAGGGAGGGGGAAAGAAAACCACACAAAAATTTTTTT
GTACTTAGTAAATGTGGAATCCCTTCCCTTTTTATTGTGGGAAAAAACCTCTCTTCTCTG
TCTCTCAATTCACTCCTGATTCAATGGTCTTGAATCATTTTAATTTAATGAGCTTTAAGT
CAGTTTATATGTATGTATGTGTATATGTATATTTTCCTTTTATTAAAGACCCTTTTTTCC
TACTATTCCCACAAAATAGATAGGACTAATAGCCAGTTATTTTAAATTAGTAGTTTGCCT
CTTCATATAAGAAATTGTCTAACCCAAGCAACTTATAGTTGTAGGAAGCAATTATCATAG
CAGGACTTGGTTGGCCTGAGCATTTATATTTCACAAGACCCAGATTTTTAAGACCAAGAG
GTATTTCAAGAGGCAAGAGGTATAGAACATTCAACCTGCAGGGCACTTTACAGAGAATCT
TATCATTAATCTCACTTAGCATGCCCTGGAGCCAGCCACGGTGAGTTTTGAATATATGTT
CAAGATCTCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTTAAATCCCAGTTCTTTAGCATGCTCTCAGCTTCAGAATTATGATCCTGACAGAGCC
CTGACAGATTATATCACTCGGCTAGAGGCGCTACAAAGACGGCTTGGAACTGTACAGTCA
GGTACCCTCAGCTTAACCAAGTACTGGCAGCACCATGGTGCTAGATAGACCCAGAACTCT
TTCTTTTCTTGAAATTCCTTGACCTTCCTCATTAGGACAATCAAATCTTAAACTTGAGTA
TGAGTTACCAAGCTAGATTTAGGAATTTAAGCCAAAACTTGATTTATCACCCTGGATCCC
ACTCTCCTGCTTATCTCATTAAGACAATTGATTAGGTGAAGTACATGATGAGCATCTATG
TACAAAGTACTCTGAGACACACAGAGTTTCTGCTGGAGAATTTGCTGCCAAGTGATACAT
GCTGAGGCATCCAAATAAGAGCTGGGGAGATGAGAGGAGGAAGCAAGTGCTTTTTATATG
TGATCCAAGAAATCCATCCTATTCAAAGGACTGTGCAAGAATGACCTTTTATTGTCTCTG
CTAAAAACAAAAAAAAACAGGAAAAGGGAGGGGGAAAGAAAACCACACAAAAATTTTTTT
GTACTTAGTAAATGTGGAATCCCTTCCCTTTTTATTGTGGGAAAAAACCTCTCTTCTCTG
TCTCTCAATTCACTCCTGATTCAATGGTCTTGAATCATTTTAATTTAATGAGCTTTAAGT
CAGTTTATATGTATGTATGTGTATATGTATATTTTCCTTTTATTAAAGACCCTTTTTTCC
TACTATTCCCACAAAATAGATAGGACTAATAGCCAGTTATTTTAAATTAGTAGTTTGCCT
CTTCATATAAGAAATTGTCTAACCCAAGCAACTTATAGTTGTAGGAAGCAATTATCATAG
CAGGACTTGGTTGGCCTGAGCATTTATATTTCACAAGACCCAGATTTTTAAGACCAAGAG
GTATTTCAAGAGGCAAGAGGTATAGAACATTCAACCTGCAGGGCACTTTACAGAGAATCT
TATCATTAATCTCACTTAGCATGCCCTGGAGCCAGCCACGGTGAGTTTTGAATATATGTT
CAAGATCTCCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|41471984|gb|AAS07419.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|41471984|gb|AAS07419.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               704-822, - strand, RNAz p=0.95106

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               704-822, - strand, RNAz p=0.95106

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-471, gnl|bosTau2|chr4 (860961-861437)
               

               
               1-471, gnl|Hg17|chr7 (91382478-91383081)
               

               
               1-471, gnl|Mm7|chr5 (4083853-4084316)
               


               
               667-938, gnl|bosTau2|chr4 (861637-861908)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-471, gnl|bosTau2|chr4 (860961-861437)
               

               
               1-471, gnl|Hg17|chr7 (91382478-91383081)
               

               
               1-471, gnl|Mm7|chr5 (4083853-4084316)
               


               
               667-938, gnl|bosTau2|chr4 (861637-861908)

	1-471, gnl\|bosTau2\|chr4 (860961-861437)
	1-471, gnl\|Hg17\|chr7 (91382478-91383081)
	1-471, gnl\|Mm7\|chr5 (4083853-4084316)

	667-938, gnl\|bosTau2\|chr4 (861637-861908)