Non-Coding RNA Search

Ss1.1-Pig4-TMW8048B13.3

Sequence:


               
               GCGGCTCGAGTGGGATCCGAAGCGGGCAACTTGGCGGGGTCTCCGGAGGAGGCGGGAAAG
GTGGATGAAACAGTGGAAAGAATGGACCCTCCACTAAGTAGCAGTTCTAACTCTTCTCTT
TCTAGAACAAGCGAGAAAGCCCAGCATGTCTTCCAGCACATCTTGTACTTTAAAAGCCAA
AGACAGAGAGGTGGCGAAGCCCCCTCCATTCTCAAGGACTCTGGCCACTCTGGGTGGTTC
AACTTAGGAGAAAAATGTGTTTTACGGCGTCAACTCAGAATCGGGGGAGAAGAATTAAAA
TTTACATTTTATATGATAAGTGATCCATCCAGAAATCATGAATTATTATGTGGCAGTGAC
AGAGCCAGTATCATGCTAAGCAGAGAGAATCTTCAGAAAAGTCCAAGGTCAGGAGGAGAA
TACATAGAAACGACTAGAAAAAAAATAAATCCTAGACAGATGGACTAACTGAAAGGATTA
ACAGAAAGCACAATAGAGTTTGAAAGAAGGCAGAGCCACGTGAGAGTTGCCGAAGTTCAT
TCATTCATTCATTCCATACTATTTTCGATTACATTGAATAAGCCACACACTCCACTCAGT
GTGTGAATAGCCTCGTATGGCCTCTGCTCACAAAAATGCATATAAATAAATCTATAAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCTCGAGTGGGATCCGAAGCGGGCAACTTGGCGGGGTCTCCGGAGGAGGCGGGAAAG
GTGGATGAAACAGTGGAAAGAATGGACCCTCCACTAAGTAGCAGTTCTAACTCTTCTCTT
TCTAGAACAAGCGAGAAAGCCCAGCATGTCTTCCAGCACATCTTGTACTTTAAAAGCCAA
AGACAGAGAGGTGGCGAAGCCCCCTCCATTCTCAAGGACTCTGGCCACTCTGGGTGGTTC
AACTTAGGAGAAAAATGTGTTTTACGGCGTCAACTCAGAATCGGGGGAGAAGAATTAAAA
TTTACATTTTATATGATAAGTGATCCATCCAGAAATCATGAATTATTATGTGGCAGTGAC
AGAGCCAGTATCATGCTAAGCAGAGAGAATCTTCAGAAAAGTCCAAGGTCAGGAGGAGAA
TACATAGAAACGACTAGAAAAAAAATAAATCCTAGACAGATGGACTAACTGAAAGGATTA
ACAGAAAGCACAATAGAGTTTGAAAGAAGGCAGAGCCACGTGAGAGTTGCCGAAGTTCAT
TCATTCATTCATTCCATACTATTTTCGATTACATTGAATAAGCCACACACTCCACTCAGT
GTGTGAATAGCCTCGTATGGCCTCTGCTCACAAAAATGCATATAAATAAATCTATAAATA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               536-645, - strand, RNAz p=0.859129

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               536-645, - strand, RNAz p=0.859129

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               69-286, gnl|bosTau2|chr15 (5698123-5697901)
               

               
               69-286, gnl|canFam2|chr21 (9207790-9207405)
               

               
               69-286, gnl|hg17|chr11 (94134507-94134854)
               

               
               69-286, gnl|Hg17|chr11 (94134722-94134506)
               

               
               69-286, gnl|loxAfr1|scaffold_40681 (9350-9000)
               

               
               69-286, gnl|panTro1|chr9 (96055668-96056015)
               

               
               69-286, gnl|rheMac2|chr14 (93298154-93298514)
               


               
               316-647, gnl|bosTau2|chr15 (5697644-5697303)
               

               
               316-647, gnl|Hg17|chr11 (94134483-94133547)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               69-286, gnl|bosTau2|chr15 (5698123-5697901)
               

               
               69-286, gnl|canFam2|chr21 (9207790-9207405)
               

               
               69-286, gnl|hg17|chr11 (94134507-94134854)
               

               
               69-286, gnl|Hg17|chr11 (94134722-94134506)
               

               
               69-286, gnl|loxAfr1|scaffold_40681 (9350-9000)
               

               
               69-286, gnl|panTro1|chr9 (96055668-96056015)
               

               
               69-286, gnl|rheMac2|chr14 (93298154-93298514)
               


               
               316-647, gnl|bosTau2|chr15 (5697644-5697303)
               

               
               316-647, gnl|Hg17|chr11 (94134483-94133547)

	69-286, gnl\|bosTau2\|chr15 (5698123-5697901)
	69-286, gnl\|canFam2\|chr21 (9207790-9207405)
	69-286, gnl\|hg17\|chr11 (94134507-94134854)
	69-286, gnl\|Hg17\|chr11 (94134722-94134506)
	69-286, gnl\|loxAfr1\|scaffold_40681 (9350-9000)
	69-286, gnl\|panTro1\|chr9 (96055668-96056015)
	69-286, gnl\|rheMac2\|chr14 (93298154-93298514)

	316-647, gnl\|bosTau2\|chr15 (5697644-5697303)
	316-647, gnl\|Hg17\|chr11 (94134483-94133547)