Non-Coding RNA Search

Ss1.1-Pig4-TMW8048E15.3

Sequence:


               
               CTATTGCTCAGATTTAGAAATAGAAATTATACTTATCCACATTCATCTTCATTGTCTCTG
CTTAGGTAGTAGCATACAATCTTGTCTTTAAGTTGGCTATATTTCTGGACTTGAAATTTT
GAGCCAAGTCTAACATCTCCCATCCACAAATAAGCCCTGTATCTCGGTCTCATTTTAAAG
ATGGTTAGAACTTAGGACCACCTCTGTTTACCAAGGTGGAGTTTGAAGTTGAGACAGAGT
CAAGACAGGAATTCTGGCATGTGGAGTTTCCCAGATAGAAAATGTGAAGGGCTAGAATTG
ATATCCACTTATCTCAGTAGGCACCCAGTGTACAATTAGCCTCTTTCTGAAGTCACTGAA
TCACAGACTCTTTGAGTTAGTAGAGAATTTTGAGGTGATATGTCAATTCCTTCTCCTTCT
CCTTTTACCCTAAGGGATCCAAGACTCAGAAAGATGGAATCATTGACCCTGAACACTGAG
CTATTAAATTGACTTTTTTGTGAAATATTGTTGGAAAATATAATTTTTTTCTTTTCATCT
TGATTCTAAATACATTGTGATTTTCCTTCTGTTACATCTTTTTTAAAATTTTATTTGATA
CTGGGTATGTTTTTTGCTTAGGAAATGATACCCAGAGGTGCTATGGAGATGGTATCTATG
AGATTAGAACTATGATTGCCCAGAGCCCTGGACTCATCAATAAACTCAGTTACCGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTATTGCTCAGATTTAGAAATAGAAATTATACTTATCCACATTCATCTTCATTGTCTCTG
CTTAGGTAGTAGCATACAATCTTGTCTTTAAGTTGGCTATATTTCTGGACTTGAAATTTT
GAGCCAAGTCTAACATCTCCCATCCACAAATAAGCCCTGTATCTCGGTCTCATTTTAAAG
ATGGTTAGAACTTAGGACCACCTCTGTTTACCAAGGTGGAGTTTGAAGTTGAGACAGAGT
CAAGACAGGAATTCTGGCATGTGGAGTTTCCCAGATAGAAAATGTGAAGGGCTAGAATTG
ATATCCACTTATCTCAGTAGGCACCCAGTGTACAATTAGCCTCTTTCTGAAGTCACTGAA
TCACAGACTCTTTGAGTTAGTAGAGAATTTTGAGGTGATATGTCAATTCCTTCTCCTTCT
CCTTTTACCCTAAGGGATCCAAGACTCAGAAAGATGGAATCATTGACCCTGAACACTGAG
CTATTAAATTGACTTTTTTGTGAAATATTGTTGGAAAATATAATTTTTTTCTTTTCATCT
TGATTCTAAATACATTGTGATTTTCCTTCTGTTACATCTTTTTTAAAATTTTATTTGATA
CTGGGTATGTTTTTTGCTTAGGAAATGATACCCAGAGGTGCTATGGAGATGGTATCTATG
AGATTAGAACTATGATTGCCCAGAGCCCTGGACTCATCAATAAACTCAGTTACCGAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               543-678, - strand, RNAz p=0.992762

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               543-678, - strand, RNAz p=0.992762

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-678, gnl|bosTau2|chr3 (55465521-55466183)
               

               
               2-678, gnl|Hg17|chr1 (64072958-64073639)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-678, gnl|bosTau2|chr3 (55465521-55466183)
               

               
               2-678, gnl|Hg17|chr1 (64072958-64073639)

	2-678, gnl\|bosTau2\|chr3 (55465521-55466183)
	2-678, gnl\|Hg17\|chr1 (64072958-64073639)