Non-Coding RNA Search

Ss1.1-Pig4-TMW8048G20.3

Sequence:


               
               TCCATTATGTAGAAGGTGCCTATGACTTGCATGATGTCATAGATCAAATTTTACATAATT
TCCTTGATGTTAAGGTTTATGTAGTGATGAGATTTCTTGAATGCTAATAACTAGGAGTAA
AAAGAAACCCCAAAATTCAGCTTATCTATTAGAACACTAGAAACTTTTTTAAGATGAAAA
ATTGTGTTTAAATTTCCATGTATTTTAACAGTGTTTGTTTTTTAACAGGTGGCCAATATG
TTNTACATTGTAGTGATTATGGCTCTTGTATTACTTAGTTTTGGTGTTCCTAGAAAGGCA
ATACTTTATCCTCATGAAGCACCATCTTGGACTCTTGCTAAAGATATAGTTTTTCATCCA
TACTGGATGATTTTCGGTGAAGTTTATGCATATGAAATTGATGTTTGTGCAAATGATTCA
TCTATTCGTGAAATCTGTGGTCCTGGGACATGGTTGACTCCATTTCTTCAAGCAGTCTAC
CTCTTTGTACAGTATATCATTATGGTCAATCTTCTCATTGCATTTTTCAACAATGTATAT
TTACAAGTGAAGGCAATTTCTAATATTGTATGGAAATACCAACGTTATCATTTTATTATG
GCTTATCATGAGAAACCAGTTTTGCCTCCACCACTTATCATTCTCAGCCATATAGTTTCT
CTGTTTTGCTGCATATGTAAAAGAAGGAAAAAAGATAAGACTTCAGATGGGCCAAAACTT
TTTTTAACAGAAGAAGATCAAAAGAAACTTCATGATTTTGAAGAGCAGTGTGTTGAGATG
TATTTTAATGAAAAAGATGACAAATTCCATTCTGGTAGCGAAGAGAGAATTCGTGTCACT
TTTGAAAGAGTGGAGCAGATGTGCATTCAGATTAAAGAAGTTGGAGATCGTGTCAACTAT
ATCAAAAGATCGTTACAGTCATTAGATTCTCAAATTGGCCATTTGCAAGATCTTTCAGCC
CTGACCGTAGATACCTTAAAAACACTTACTGCCCAGAAAGCTTCAGAAGCTAGCAAAGTT
CACAATGAAATTACACGAGAATTGAGCGTTTCTAAACATTTGGCTCAAAACCTTATTGAT
GATGGTCCCATAAGACCTTCTGTATGGAAAAAGCACAGTGTTGTAAATACACTTAGCTCC
TCTCTTCCGCAAAGTGGTCTTGAAAGTAATAATCCATTTCTTTGTAATATTTTTATGAAA
GATGAAAAAGATCCCCAATGTAATATATTTGGTCAGGATTTACCTGTAATACCCCGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCATTATGTAGAAGGTGCCTATGACTTGCATGATGTCATAGATCAAATTTTACATAATT
TCCTTGATGTTAAGGTTTATGTAGTGATGAGATTTCTTGAATGCTAATAACTAGGAGTAA
AAAGAAACCCCAAAATTCAGCTTATCTATTAGAACACTAGAAACTTTTTTAAGATGAAAA
ATTGTGTTTAAATTTCCATGTATTTTAACAGTGTTTGTTTTTTAACAGGTGGCCAATATG
TTNTACATTGTAGTGATTATGGCTCTTGTATTACTTAGTTTTGGTGTTCCTAGAAAGGCA
ATACTTTATCCTCATGAAGCACCATCTTGGACTCTTGCTAAAGATATAGTTTTTCATCCA
TACTGGATGATTTTCGGTGAAGTTTATGCATATGAAATTGATGTTTGTGCAAATGATTCA
TCTATTCGTGAAATCTGTGGTCCTGGGACATGGTTGACTCCATTTCTTCAAGCAGTCTAC
CTCTTTGTACAGTATATCATTATGGTCAATCTTCTCATTGCATTTTTCAACAATGTATAT
TTACAAGTGAAGGCAATTTCTAATATTGTATGGAAATACCAACGTTATCATTTTATTATG
GCTTATCATGAGAAACCAGTTTTGCCTCCACCACTTATCATTCTCAGCCATATAGTTTCT
CTGTTTTGCTGCATATGTAAAAGAAGGAAAAAAGATAAGACTTCAGATGGGCCAAAACTT
TTTTTAACAGAAGAAGATCAAAAGAAACTTCATGATTTTGAAGAGCAGTGTGTTGAGATG
TATTTTAATGAAAAAGATGACAAATTCCATTCTGGTAGCGAAGAGAGAATTCGTGTCACT
TTTGAAAGAGTGGAGCAGATGTGCATTCAGATTAAAGAAGTTGGAGATCGTGTCAACTAT
ATCAAAAGATCGTTACAGTCATTAGATTCTCAAATTGGCCATTTGCAAGATCTTTCAGCC
CTGACCGTAGATACCTTAAAAACACTTACTGCCCAGAAAGCTTCAGAAGCTAGCAAAGTT
CACAATGAAATTACACGAGAATTGAGCGTTTCTAAACATTTGGCTCAAAACCTTATTGAT
GATGGTCCCATAAGACCTTCTGTATGGAAAAAGCACAGTGTTGTAAATACACTTAGCTCC
TCTCTTCCGCAAAGTGGTCTTGAAAGTAATAATCCATTTCTTTGTAATATTTTTATGAAA
GATGAAAAAGATCCCCAATGTAATATATTTGGTCAGGATTTACCTGTAATACCCCGAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|9929957|dbj|BAB12135.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|9929957|dbj|BAB12135.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               281-403, + strand, RNAz p=0.713227
               

               
               1046-1165, - strand, RNAz p=0.770396

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               281-403, + strand, RNAz p=0.713227
               

               
               1046-1165, - strand, RNAz p=0.770396

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               3-403, gnl|bosTau2|chr3 (16029382-16029787)
               

               
               3-403, gnl|Hg17|chr15 (48679033-48678611)
               

               
               3-403, gnl|Mm7|chr2 (126562384-126562017)
               


               
               525-715, gnl|bosTau2|chr3 (16034437-16034627)
               

               
               525-715, gnl|Hg17|chr15 (48674108-48673918)
               

               
               525-715, gnl|Mm7|chr2 (126557803-126557613)
               


               
               847-1260, gnl|bosTau2|chr3 (16036345-16036759)
               

               
               847-1260, gnl|Hg17|chr15 (48672117-48671703)
               

               
               847-1260, gnl|Mm7|chr2 (126554263-126553852)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-403, gnl|bosTau2|chr3 (16029382-16029787)
               

               
               3-403, gnl|Hg17|chr15 (48679033-48678611)
               

               
               3-403, gnl|Mm7|chr2 (126562384-126562017)
               


               
               525-715, gnl|bosTau2|chr3 (16034437-16034627)
               

               
               525-715, gnl|Hg17|chr15 (48674108-48673918)
               

               
               525-715, gnl|Mm7|chr2 (126557803-126557613)
               


               
               847-1260, gnl|bosTau2|chr3 (16036345-16036759)
               

               
               847-1260, gnl|Hg17|chr15 (48672117-48671703)
               

               
               847-1260, gnl|Mm7|chr2 (126554263-126553852)

	281-403, + strand, RNAz p=0.713227
	1046-1165, - strand, RNAz p=0.770396

	3-403, gnl\|bosTau2\|chr3 (16029382-16029787)
	3-403, gnl\|Hg17\|chr15 (48679033-48678611)
	3-403, gnl\|Mm7\|chr2 (126562384-126562017)

	525-715, gnl\|bosTau2\|chr3 (16034437-16034627)
	525-715, gnl\|Hg17\|chr15 (48674108-48673918)
	525-715, gnl\|Mm7\|chr2 (126557803-126557613)

	847-1260, gnl\|bosTau2\|chr3 (16036345-16036759)
	847-1260, gnl\|Hg17\|chr15 (48672117-48671703)
	847-1260, gnl\|Mm7\|chr2 (126554263-126553852)