Ss1.1-Pig4-TMW8048L24.3
|
GGGGCCTGGAAACTTAGTGTAACACCTGAGTATTCATGTTGCTATAGCATTTCATGACAG
GAGTCATGATGGAGAACATATACTCAGAGCAGTAGGGCTCCTTTCCCATAAGGATCAAGA
AGGACAGGGTCACTGGTCTAAGATCATGTCACACCTGGAGGTTCCACCTATTCAACAGGA
CAAGGAAGCCTCATGGGCTCAGGCCTTTCACTCTCTTCAAAGGATAAAAAGGAAATCCCA
AGAATATCACCTCCCCACCAAGAAAGCTAACATCCTAGTCTCCACTGTCTTCCTTTAACA
CTGTTATCTCATTGTACAACAGACTCCCAGACTCAGGAATATCTGATCACTTGTTCCTTC
TCTGACTCTGACATCCTTTCCCTTACTTCACTTTTTATTCTTCTCCATTTATCCTGGCTT
CCTGACTGGGTTTACATTAGGCACTTCTTGCCCTCGGGCCTTTCTGCCAGCTGTGCCCAC
TACCTGCAATTTCCTTTGCCCAGATTTCTTTTTAATTCATTCCCTTTCTTTTTTAAGCAT
GCTCAAATCCATCTTCTCAGTGAGAACCACACAATCTGACCCATGCCAAAGCCCTCTCAC
CCTCCCATTCCCCTTCACTGGGTCTAATGGAGGCACTTTCCTTCAATATAGTGCTTATCA
ATTTCTAATGTATTATATTGTTATTCTATTTATGGGGTTTACTTTTTCCAATTTTGGTTT
TTGTTTGTTTTTTGCTTTTGCCTTTTCTGGATAGAATGTAAGCACCCTGAGGGGAGGGAC
CTTTGTGTATTGATAATGATATGTTTGCCATATTTCAAACACCCCAAGTACTGCTTTGTG
TGTGGCTATCATTCAGTGCCTATTTGTTGTATAAATAAATGGTTAACTTTTGGCAGGGGG
AGTTAAGTGATGGACCTGAAAATATTTTGTGAAATATGACATAATAGTATTATTACTATT
ATTATTAATATAAAATAATATAGTGGTATTATTACTATTATTGCTCAAGCATTGGCTCCA
TTGAACCTCCTGTAGCTTTGATTCCTTATGAAAAAACAGCAGTGTCTTTGATTTATGCAT
TGCTTTGTTTGCAGTCTCTATGCCAATTCTCTTACTCACTAGGAGTTCAGAGAATGTTAC
ATAAAATTATAT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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GGGGCCTGGAAACTTAGTGTAACACCTGAGTATTCATGTTGCTATAGCATTTCATGACAG
GAGTCATGATGGAGAACATATACTCAGAGCAGTAGGGCTCCTTTCCCATAAGGATCAAGA
AGGACAGGGTCACTGGTCTAAGATCATGTCACACCTGGAGGTTCCACCTATTCAACAGGA
CAAGGAAGCCTCATGGGCTCAGGCCTTTCACTCTCTTCAAAGGATAAAAAGGAAATCCCA
AGAATATCACCTCCCCACCAAGAAAGCTAACATCCTAGTCTCCACTGTCTTCCTTTAACA
CTGTTATCTCATTGTACAACAGACTCCCAGACTCAGGAATATCTGATCACTTGTTCCTTC
TCTGACTCTGACATCCTTTCCCTTACTTCACTTTTTATTCTTCTCCATTTATCCTGGCTT
CCTGACTGGGTTTACATTAGGCACTTCTTGCCCTCGGGCCTTTCTGCCAGCTGTGCCCAC
TACCTGCAATTTCCTTTGCCCAGATTTCTTTTTAATTCATTCCCTTTCTTTTTTAAGCAT
GCTCAAATCCATCTTCTCAGTGAGAACCACACAATCTGACCCATGCCAAAGCCCTCTCAC
CCTCCCATTCCCCTTCACTGGGTCTAATGGAGGCACTTTCCTTCAATATAGTGCTTATCA
ATTTCTAATGTATTATATTGTTATTCTATTTATGGGGTTTACTTTTTCCAATTTTGGTTT
TTGTTTGTTTTTTGCTTTTGCCTTTTCTGGATAGAATGTAAGCACCCTGAGGGGAGGGAC
CTTTGTGTATTGATAATGATATGTTTGCCATATTTCAAACACCCCAAGTACTGCTTTGTG
TGTGGCTATCATTCAGTGCCTATTTGTTGTATAAATAAATGGTTAACTTTTGGCAGGGGG
AGTTAAGTGATGGACCTGAAAATATTTTGTGAAATATGACATAATAGTATTATTACTATT
ATTATTAATATAAAATAATATAGTGGTATTATTACTATTATTGCTCAAGCATTGGCTCCA
TTGAACCTCCTGTAGCTTTGATTCCTTATGAAAAAACAGCAGTGTCTTTGATTTATGCAT
TGCTTTGTTTGCAGTCTCTATGCCAATTCTCTTACTCACTAGGAGTTCAGAGAATGTTAC
ATAAAATTATAT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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1-318, gnl|bosTau2|chr7 (27305090-27305420) |
| |
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537-970, gnl|bosTau2|chr7 (27306363-27306778) |
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537-970, gnl|canFam2|chr14 (4529865-4529489) |
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537-970, gnl|dasNov1|scaffold_27136 (3963-4296) |
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537-970, gnl|hg17|chr1 (244369149-244369493) |
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537-970, gnl|Hg17|chr1 (244369155-244369540) |
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537-970, gnl|loxAfr1|scaffold_9874 (19271-18937) |
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537-970, gnl|mm7|chr11 (58736746-58737073) |
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537-970, gnl|panTro1|chr1 (228442120-228442467) |
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537-970, gnl|rheMac2|chr1 (209128501-209128149) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-318, gnl|bosTau2|chr7 (27305090-27305420) |
| |
|
537-970, gnl|bosTau2|chr7 (27306363-27306778) |
|
537-970, gnl|canFam2|chr14 (4529865-4529489) |
|
537-970, gnl|dasNov1|scaffold_27136 (3963-4296) |
|
537-970, gnl|hg17|chr1 (244369149-244369493) |
|
537-970, gnl|Hg17|chr1 (244369155-244369540) |
|
537-970, gnl|loxAfr1|scaffold_9874 (19271-18937) |
|
537-970, gnl|mm7|chr11 (58736746-58737073) |
|
537-970, gnl|panTro1|chr1 (228442120-228442467) |
|
537-970, gnl|rheMac2|chr1 (209128501-209128149) |
