Ss1.1-Pig4-TMW8048O12.3
|
CAGTTATCCCTCCTTTTATCCATACTCACATCATTGATGTGCTGCTTTTAAAAACCTAAT
TTGAAGCTGCTGTCCTGGGATTTTTCAATCCATAATGATTTAAAATATATAGAAATATCT
TGTGGTACTTAGCCCATCATTCTGAATGAAACAGGTTTAACTCAAAACTTAAAAAAGATG
AGAGTATTTTATTACAAAGATATTTTAAAATTATTGGCTGATACTAGTTTCTTGCCCAGT
AAGGTGAGCAGCACCATATTCCCTTATGATATGCAACATAAAGAGAACAAGTATTCAAAC
TGGAATACAGTAGTAATGAAGGCTCTTTATACATTGCTCTCATTGTTCAACCACTGTTTA
TTCCCTTTCCAGTGGGATATTTTTCCTTTTTCCTTTTTTTGTTTAAATTAGGCACTGTTA
AACTAAAAGTATTGAATTTATTTTGTTTTGTTTTTTAACAGAAGCTTTGATATCAGCTGC
AGATCACTCAGTACATGGCCGAGGCAAATCTACATTGGCCCGAAGCAGCTCTAGATGAGC
CTGTTGGCTAGTCTCAGCCCCTCCCAGTTAGTGATTGGAGATTCAGGCCATGTCATAGGG
CTTGTCAGACAAAAAGTTCTTATCCTAGGCAGCTGGCCAAAATATTAACTTTTCGATTTC
TTACCCTGCAACAGCATCTTCTTTAAAGGCACCAAGGTAATATTGTGGCAGTGCACAAAT
AACATCAGGGCAGGCTTGACTGGAGACAACAACCAAATTCTGCGCTTGCTCATATGTGCC
CAGCTGTATGTGTGCACACCCAAGACACCTTTCTTGTATGAAGAACTTGCATCGTGTCTG
CCCCCTTTTGAG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CAGTTATCCCTCCTTTTATCCATACTCACATCATTGATGTGCTGCTTTTAAAAACCTAAT
TTGAAGCTGCTGTCCTGGGATTTTTCAATCCATAATGATTTAAAATATATAGAAATATCT
TGTGGTACTTAGCCCATCATTCTGAATGAAACAGGTTTAACTCAAAACTTAAAAAAGATG
AGAGTATTTTATTACAAAGATATTTTAAAATTATTGGCTGATACTAGTTTCTTGCCCAGT
AAGGTGAGCAGCACCATATTCCCTTATGATATGCAACATAAAGAGAACAAGTATTCAAAC
TGGAATACAGTAGTAATGAAGGCTCTTTATACATTGCTCTCATTGTTCAACCACTGTTTA
TTCCCTTTCCAGTGGGATATTTTTCCTTTTTCCTTTTTTTGTTTAAATTAGGCACTGTTA
AACTAAAAGTATTGAATTTATTTTGTTTTGTTTTTTAACAGAAGCTTTGATATCAGCTGC
AGATCACTCAGTACATGGCCGAGGCAAATCTACATTGGCCCGAAGCAGCTCTAGATGAGC
CTGTTGGCTAGTCTCAGCCCCTCCCAGTTAGTGATTGGAGATTCAGGCCATGTCATAGGG
CTTGTCAGACAAAAAGTTCTTATCCTAGGCAGCTGGCCAAAATATTAACTTTTCGATTTC
TTACCCTGCAACAGCATCTTCTTTAAAGGCACCAAGGTAATATTGTGGCAGTGCACAAAT
AACATCAGGGCAGGCTTGACTGGAGACAACAACCAAATTCTGCGCTTGCTCATATGTGCC
CAGCTGTATGTGTGCACACCCAAGACACCTTTCTTGTATGAAGAACTTGCATCGTGTCTG
CCCCCTTTTGAG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-342, gnl|bosTau2|chr5 (68016429-68016768) |
|
1-342, gnl|Hg17|chr22 (37212009-37211676) |
|
1-342, gnl|Mm7|chr15 (79619602-79619028) |
| |
|
354-851, gnl|bosTau2|chr5 (68017421-68017923) |
|
354-851, gnl|canFam2|chr10 (29369347-29368828) |
|
354-851, gnl|dasNov1|scaffold_50486 (3265-3773) |
|
354-851, gnl|echTel1|scaffold_43159 (2975-2450) |
|
354-851, gnl|galGal2|chr1 (47615676-47615124) |
|
354-851, gnl|hg17|chr22 (37210356-37210872) |
|
354-851, gnl|Hg17|chr22 (37211050-37210552) |
|
354-851, gnl|loxAfr1|scaffold_39570 (7464-7993) |
|
354-851, gnl|mm7|chr15 (79617720-79618209) |
|
354-851, gnl|Mm7|chr15 (79618382-79617905) |
|
354-851, gnl|monDom2|scaffold_133 (2589585-2589046) |
|
354-851, gnl|panTro1|chr23 (37434326-37434841) |
|
354-851, gnl|rheMac2|chr10 (82393377-82393892) |
|
354-851, gnl|rn3|chr7 (117584858-117584364) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-342, gnl|bosTau2|chr5 (68016429-68016768) |
|
1-342, gnl|Hg17|chr22 (37212009-37211676) |
|
1-342, gnl|Mm7|chr15 (79619602-79619028) |
| |
|
354-851, gnl|bosTau2|chr5 (68017421-68017923) |
|
354-851, gnl|canFam2|chr10 (29369347-29368828) |
|
354-851, gnl|dasNov1|scaffold_50486 (3265-3773) |
|
354-851, gnl|echTel1|scaffold_43159 (2975-2450) |
|
354-851, gnl|galGal2|chr1 (47615676-47615124) |
|
354-851, gnl|hg17|chr22 (37210356-37210872) |
|
354-851, gnl|Hg17|chr22 (37211050-37210552) |
|
354-851, gnl|loxAfr1|scaffold_39570 (7464-7993) |
|
354-851, gnl|mm7|chr15 (79617720-79618209) |
|
354-851, gnl|Mm7|chr15 (79618382-79617905) |
|
354-851, gnl|monDom2|scaffold_133 (2589585-2589046) |
|
354-851, gnl|panTro1|chr23 (37434326-37434841) |
|
354-851, gnl|rheMac2|chr10 (82393377-82393892) |
|
354-851, gnl|rn3|chr7 (117584858-117584364) |
