Non-Coding RNA Search

Ss1.1-Pig4-TMW8049B02.3

Sequence:


               
               CTGGGTGGGCCAGAAACGGGTGCTCCTAGAAACCCATTCCAGTGCTTTTCAGCTCTCCTC
ACTTGTGTTTGCCCTTGTTTCCCATTTATATTTATGGTGTGTTAAGACATTCCACAGTTC
TGGCTTTCTTTCCTTCTGTTTTGGATAGAATATTCTCTGTCCTGTCTGAGAACGTGCATG
TGTTTTTATGACCACGAATGCTGGCAGTGAGTTGAGTGTCTGTCTACTTGGCACATGTCT
CAGTGAGCCTGGGACAAAGAGCCCCTAGAATACATGCCTCTTCCTCCGAGCAGCTCCTAG
GCCAGGTGGAGGGGCGGGCTGACTTTCCTGTTGTGCAGGTCTGGTGTCAGGGATGCTGTA
ATGTGACAGTGATGGGGAATTGTGTGGGTCCTCCTTCACTCCTGGGCCTCTCCTGAGTTC
CTCACCCGCCCTCCCCAAAACTCGTTTGAGTATGTTTCGGTCCCCCTGAGGAAGCATCAG
CTGTTGCCCTTCACTGTCCCCAGGCCTCGTCACCTGCCACATGGCCACACTTCCTTGCAG
AGCCACTCTAGACTCTTCACCCACCCCGCAATGCCAGCTCTTTCCAGAGTCCCCCTCTGC
CATTTCACATCCAGCGGCTTCTCTCCCACCTTCCCCTGNGAGAGTCTCACAGTCCCTCGA
AATTCCCAGACCGTCTCCCGCTGCCCTGGCTGTAAGCCCCTCTGCTGGGCTGCTCTGCTC
AGCACTACATGGTAAGTTACCTGCTAACATCTTAAAACCCCTGTTGAGCCGGCGGCTTCC
TGAATAGGGGAGCTGTCTTACCCATCTTTGCGTGGTAGCCGCCCACTGTGGGCTGCCACT
TGTAGCGGTTTATAGGTATTGGTGCGTGGACCTGGAATGATATGTAGATTTAGGAGATCT
TTGGAATTACAAAAGTTTTGTGAAGCCTAGAAAACGTTTATGGGCTGTTTTGTCTCTGCA
GTTGTGTTCACTTAGGAGTGTTTTTCTTTCGTGACTTAATCTTTATGGATTTCATTTTAA
TTTACAGTCAGCTTCTGGTGGAGCAGTGTGTGCTGTGCAGAACTGGTGTCCTGTGCTGCC
CTTGATGTTGATCCAGTTGTCAGGCTGGAAGCTTCCTCTGGGCATATCCTGGGCACCCCC
AGAGAGGTTCAGAGAGGCCCGGGAGAGAAAGGGCAGGGCAATTAATTCAAGGATCCAATT
GTTTGTTCTTTTGGTCCAGTGGAAATGAGTCAGCAAAGTTGCTTAGATAAAATCATCCAT
GGTGTTTTTCTCTCCCCTAGAGTGTTTAAAAACAAGTAAGAATTTTGTGGAGTGGCTACT
GCAATTTGAAATACTAAACAGAAAGTTTATCGAGCATATGGCAAGTTAGAGTAGGGAGCA
GCCCTATAAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGGTGGGCCAGAAACGGGTGCTCCTAGAAACCCATTCCAGTGCTTTTCAGCTCTCCTC
ACTTGTGTTTGCCCTTGTTTCCCATTTATATTTATGGTGTGTTAAGACATTCCACAGTTC
TGGCTTTCTTTCCTTCTGTTTTGGATAGAATATTCTCTGTCCTGTCTGAGAACGTGCATG
TGTTTTTATGACCACGAATGCTGGCAGTGAGTTGAGTGTCTGTCTACTTGGCACATGTCT
CAGTGAGCCTGGGACAAAGAGCCCCTAGAATACATGCCTCTTCCTCCGAGCAGCTCCTAG
GCCAGGTGGAGGGGCGGGCTGACTTTCCTGTTGTGCAGGTCTGGTGTCAGGGATGCTGTA
ATGTGACAGTGATGGGGAATTGTGTGGGTCCTCCTTCACTCCTGGGCCTCTCCTGAGTTC
CTCACCCGCCCTCCCCAAAACTCGTTTGAGTATGTTTCGGTCCCCCTGAGGAAGCATCAG
CTGTTGCCCTTCACTGTCCCCAGGCCTCGTCACCTGCCACATGGCCACACTTCCTTGCAG
AGCCACTCTAGACTCTTCACCCACCCCGCAATGCCAGCTCTTTCCAGAGTCCCCCTCTGC
CATTTCACATCCAGCGGCTTCTCTCCCACCTTCCCCTGNGAGAGTCTCACAGTCCCTCGA
AATTCCCAGACCGTCTCCCGCTGCCCTGGCTGTAAGCCCCTCTGCTGGGCTGCTCTGCTC
AGCACTACATGGTAAGTTACCTGCTAACATCTTAAAACCCCTGTTGAGCCGGCGGCTTCC
TGAATAGGGGAGCTGTCTTACCCATCTTTGCGTGGTAGCCGCCCACTGTGGGCTGCCACT
TGTAGCGGTTTATAGGTATTGGTGCGTGGACCTGGAATGATATGTAGATTTAGGAGATCT
TTGGAATTACAAAAGTTTTGTGAAGCCTAGAAAACGTTTATGGGCTGTTTTGTCTCTGCA
GTTGTGTTCACTTAGGAGTGTTTTTCTTTCGTGACTTAATCTTTATGGATTTCATTTTAA
TTTACAGTCAGCTTCTGGTGGAGCAGTGTGTGCTGTGCAGAACTGGTGTCCTGTGCTGCC
CTTGATGTTGATCCAGTTGTCAGGCTGGAAGCTTCCTCTGGGCATATCCTGGGCACCCCC
AGAGAGGTTCAGAGAGGCCCGGGAGAGAAAGGGCAGGGCAATTAATTCAAGGATCCAATT
GTTTGTTCTTTTGGTCCAGTGGAAATGAGTCAGCAAAGTTGCTTAGATAAAATCATCCAT
GGTGTTTTTCTCTCCCCTAGAGTGTTTAAAAACAAGTAAGAATTTTGTGGAGTGGCTACT
GCAATTTGAAATACTAAACAGAAAGTTTATCGAGCATATGGCAAGTTAGAGTAGGGAGCA
GCCCTATAAAGA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               839-987, - strand, RNAz p=0.855902
               

               
               1062-1220, - strand, RNAz p=0.906432

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               839-987, - strand, RNAz p=0.855902
               

               
               1062-1220, - strand, RNAz p=0.906432

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               29-1257, gnl|bosTau2|chr4 (43914253-43912985)
               

               
               29-1257, gnl|Hg17|chr7 (47788282-47786642)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               29-1257, gnl|bosTau2|chr4 (43914253-43912985)
               

               
               29-1257, gnl|Hg17|chr7 (47788282-47786642)

	839-987, - strand, RNAz p=0.855902
	1062-1220, - strand, RNAz p=0.906432

	29-1257, gnl\|bosTau2\|chr4 (43914253-43912985)
	29-1257, gnl\|Hg17\|chr7 (47788282-47786642)