Non-Coding RNA Search

Ss1.1-Pig4-TMW8049C13.3

Sequence:


               
               CAACGTAGGAGCAACTCATCTGTCTTCCAAAGAACAGTTAGCCACCTAACCTTACTTAAG
GGAGGTTGAAGTAAATGCCTTCAGGACATCACTGCCCTCTCTCACCACTTGTCATCAGGC
GCGGGCCTCTGGAGCCAATGTGAGGATCTGAGAACATAGGCAGATAAATCGATTCAAGAA
GAAACAAAGGTTTCACTTCACCAGCCAGAAGCCTCCCTTTTTATAATTATTTTCCTTAAC
ATCTTGGTAAGTGTAGGATTAGGGGAATGTTGCTGTTTTGGCGTTGTATTTGCTAAAACA
AAGGTTATCTTGACAAGTTCATTTTTTAACTTCTTTTTGCCAAAAGAAAAAAAAAAAAAA
AGATACAGAACTATAGTTGTGCATAGCTGTGGAACTAATGTGTCCTGACCACATTGCTGA
CAGCTTTGGTAGGACTTCTTGCCAATGTATGAGGTTGTTGACAAAAGACGTAACTTATGG
GTCCTGTAAGGCATTCTTTTTCTGCCTGGCAAGTGTCCCTCTTCCCTCTTGAGATTAGGC
AGTGGCAGTTCTACCTTGTGAGAAATGCAGTTTCTTTTCTAAGTGGCCTGCCCAAGTTAG
ATGGGGGAGGAAGAGATAAGGACACTTCCCATGTGATTGACGTGGTTCAATGATCCCGAG
GGGCCACAGTGGGTTTTTTTTTTTTTTTAATGGATCTATTTGGGAGCTATGCTGGTTGAG
CAGTTTTGTAAGCTGTATAGATTGTTGTTTTGTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACGTAGGAGCAACTCATCTGTCTTCCAAAGAACAGTTAGCCACCTAACCTTACTTAAG
GGAGGTTGAAGTAAATGCCTTCAGGACATCACTGCCCTCTCTCACCACTTGTCATCAGGC
GCGGGCCTCTGGAGCCAATGTGAGGATCTGAGAACATAGGCAGATAAATCGATTCAAGAA
GAAACAAAGGTTTCACTTCACCAGCCAGAAGCCTCCCTTTTTATAATTATTTTCCTTAAC
ATCTTGGTAAGTGTAGGATTAGGGGAATGTTGCTGTTTTGGCGTTGTATTTGCTAAAACA
AAGGTTATCTTGACAAGTTCATTTTTTAACTTCTTTTTGCCAAAAGAAAAAAAAAAAAAA
AGATACAGAACTATAGTTGTGCATAGCTGTGGAACTAATGTGTCCTGACCACATTGCTGA
CAGCTTTGGTAGGACTTCTTGCCAATGTATGAGGTTGTTGACAAAAGACGTAACTTATGG
GTCCTGTAAGGCATTCTTTTTCTGCCTGGCAAGTGTCCCTCTTCCCTCTTGAGATTAGGC
AGTGGCAGTTCTACCTTGTGAGAAATGCAGTTTCTTTTCTAAGTGGCCTGCCCAAGTTAG
ATGGGGGAGGAAGAGATAAGGACACTTCCCATGTGATTGACGTGGTTCAATGATCCCGAG
GGGCCACAGTGGGTTTTTTTTTTTTTTTAATGGATCTATTTGGGAGCTATGCTGGTTGAG
CAGTTTTGTAAGCTGTATAGATTGTTGTTTTGTTTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               337-452, + strand, RNAz p=0.888918

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               337-452, + strand, RNAz p=0.888918

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               110-734, gnl|bosTau2|chr5 (65311322-65310699)
               

               
               110-734, gnl|Hg17|chr12 (1418828-1419449)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               110-734, gnl|bosTau2|chr5 (65311322-65310699)
               

               
               110-734, gnl|Hg17|chr12 (1418828-1419449)

	110-734, gnl\|bosTau2\|chr5 (65311322-65310699)
	110-734, gnl\|Hg17\|chr12 (1418828-1419449)