Non-Coding RNA Search

Ss1.1-Pig4-TMW8049F07.5

Sequence:


               
               GTGAACCTCAGAAAGATGAAGTACTCCAATTTCCTGACCGAGGCCTCTCCCCTGGAGAGG
CAGAGTCCCTCTCTGTCCTCAGCGTGGTCTCCCCAGACACTGCCAACCAAGACGCCATCC
CTAGGTCTCCCTGTGGCCTGACAGAGCAGCACCTACGCAAAGATCTTTGGCCACAAGTAT
CTCCAGAAGATACCCGGTCACTTTCTTTCTCAGAAGAGAGTCCTAGCAAGGAGACCTCTC
TGGATATCTCTTCTAAGCAGCTGTCTCCAGAAAGCCTTGGCACCCTCCAGTTTGGGGAAC
TAAGCCTAGGAAAGGAAGAAAAGGGGCCTCTGATGCAGGCTGAAGACACCTCCCATCACC
CAGCCCCTGTATCTATTCCAGAGCCCTGTGCAACCACGGTGTCACCTCCCACAGATTGGA
CCAGTGGATACTCTGCACAGGCAGACATCACAGATGAGAGCCCTGATGGAAAATTCCCTG
CCAGCTCCTTCTCTCACTCTGCACTGTTAGGAGATGGGAAGCACTTACCTGGAGTGATAA
CAAGCCCTGATGAACACATTCTGACACCTGATAGCTCCCTCACCAAGAGTCCTGAGTCTT
TGCCAAGCCCTGCCATGGAGGATATTGCCATGGAATGGGAAGGCAAAGTTCCAGAGTTGA
AAGACAGAACCCCAGAGCAGAAGGAGAAGGGACCTGAGCCAACAGATGAAGTCCTACAGC
AGAAGGACAAGACTCTGGAGCACAAGGATATTGTCACAGAGCAGAAGGATACAGCCATCG
ATCAGAAAGATGAGGTTCTGGAAGAAAGGGACAAAGCTGTGGAACAGCAGGATAAGAGTT
TAGAACAAAAAGGCAGAGCCTTAGAACAAAGGGACACAGCCCAGGAACAGAAGGAGAAGG
CCCCTGAAGTAAAACACAAAGACTTAGAATCAACAGACAGAGACTTAGAACCAAAAGACA
GAGATTTAGAACTAACAGACAGAGACTTAGAACCAAAAGACAAGGCCCTGGAACAGGAGG
ACAAGGCCCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAACCTCAGAAAGATGAAGTACTCCAATTTCCTGACCGAGGCCTCTCCCCTGGAGAGG
CAGAGTCCCTCTCTGTCCTCAGCGTGGTCTCCCCAGACACTGCCAACCAAGACGCCATCC
CTAGGTCTCCCTGTGGCCTGACAGAGCAGCACCTACGCAAAGATCTTTGGCCACAAGTAT
CTCCAGAAGATACCCGGTCACTTTCTTTCTCAGAAGAGAGTCCTAGCAAGGAGACCTCTC
TGGATATCTCTTCTAAGCAGCTGTCTCCAGAAAGCCTTGGCACCCTCCAGTTTGGGGAAC
TAAGCCTAGGAAAGGAAGAAAAGGGGCCTCTGATGCAGGCTGAAGACACCTCCCATCACC
CAGCCCCTGTATCTATTCCAGAGCCCTGTGCAACCACGGTGTCACCTCCCACAGATTGGA
CCAGTGGATACTCTGCACAGGCAGACATCACAGATGAGAGCCCTGATGGAAAATTCCCTG
CCAGCTCCTTCTCTCACTCTGCACTGTTAGGAGATGGGAAGCACTTACCTGGAGTGATAA
CAAGCCCTGATGAACACATTCTGACACCTGATAGCTCCCTCACCAAGAGTCCTGAGTCTT
TGCCAAGCCCTGCCATGGAGGATATTGCCATGGAATGGGAAGGCAAAGTTCCAGAGTTGA
AAGACAGAACCCCAGAGCAGAAGGAGAAGGGACCTGAGCCAACAGATGAAGTCCTACAGC
AGAAGGACAAGACTCTGGAGCACAAGGATATTGTCACAGAGCAGAAGGATACAGCCATCG
ATCAGAAAGATGAGGTTCTGGAAGAAAGGGACAAAGCTGTGGAACAGCAGGATAAGAGTT
TAGAACAAAAAGGCAGAGCCTTAGAACAAAGGGACACAGCCCAGGAACAGAAGGAGAAGG
CCCCTGAAGTAAAACACAAAGACTTAGAATCAACAGACAGAGACTTAGAACCAAAAGACA
GAGATTTAGAACTAACAGACAGAGACTTAGAACCAAAAGACAAGGCCCTGGAACAGGAGG
ACAAGGCCCCAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               42-398, - strand, RNAz p=0.982509

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-398, - strand, RNAz p=0.982509

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-1027, gnl|bosTau2|chr21 (34377005-34378033)
               

               
               3-1027, gnl|Hg17|chr15 (41604354-41605205)
               

               
               3-1027, gnl|Mm7|chr2 (121043619-121044552)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1027, gnl|bosTau2|chr21 (34377005-34378033)
               

               
               3-1027, gnl|Hg17|chr15 (41604354-41605205)
               

               
               3-1027, gnl|Mm7|chr2 (121043619-121044552)

	3-1027, gnl\|bosTau2\|chr21 (34377005-34378033)
	3-1027, gnl\|Hg17\|chr15 (41604354-41605205)
	3-1027, gnl\|Mm7\|chr2 (121043619-121044552)