Non-Coding RNA Search

Ss1.1-Pig4-TMW8049J03.5

Sequence:


               
               TCCTTGATACGATGAATAACGTTACCACTGGCTTTTTTTCTGTGATTCGCATCTGTGACT
TGTCCTGAAATGGCTGGTTGAAAGAAGCGCCCTTTTGCAAAGCTGCGGCACCTGGCCATG
CTGGCTTCCGGAAGAACGGACCCCTCTGTCCTCCATGTGTAGTGGTCACAAGTTTTTGTT
TCACATAATGTATTTCACATGTTTAAAAATATCTTCACCATGTTGAAAATCGAAGCTCGG
GTGTTGTGCACACAGATCACCCACAGTGGCCTATTCGGGCCTGCGTGTTGATTCACTCCC
ACCAGCCGGGCTGAGCTTGGGTTTGTCCCCACGGGGGGAGCAGCTGGACGAGGAAGAGGG
GGCCCGCCAGAAACTGCAGCTGGAGCCAGAAGTACCTATTCTCTAGGTAGCAGCAAACCC
AGTGGTTATTTTGAATGCCTTTTTTGAAGCAGTGTTTCCTGTTCAGGAAAAGAAACTCAT
GGAAGATCGCATTGCTGAGTGCTCCTCTCAGCTGGCTGAGGAGGAGGAAAAGGCCAAAAA
CTTGGCCAAAATCAGGAACAAGCAAGAAGTGATGATCTCGGATTTAGAAGGTTAGTATTC
GAGGTTAGAGAAATTTAGGACTAAGACACGTGAGTCTTTAGATTTTACTTAAATCGAAAC
ACGTGGGAGTTCCCATCGTGGCGCAGAGGAAACAGATCTGTGTAGTATCCATGAGGATGT
GGGTTTGGTCCCTGCCCTCGTTCAGTGGGTAGGGGATTCAGCGATGCCTCGAGCTGTGGT
GCACAAGAACAACGCACTGAAGGTCGTGCGGGAGCTGCAAGCCCAGATCGCTGAGCTTCA
GGAAGACTTTGA------------GTCGCGGAACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCTTGATACGATGAATAACGTTACCACTGGCTTTTTTTCTGTGATTCGCATCTGTGACT
TGTCCTGAAATGGCTGGTTGAAAGAAGCGCCCTTTTGCAAAGCTGCGGCACCTGGCCATG
CTGGCTTCCGGAAGAACGGACCCCTCTGTCCTCCATGTGTAGTGGTCACAAGTTTTTGTT
TCACATAATGTATTTCACATGTTTAAAAATATCTTCACCATGTTGAAAATCGAAGCTCGG
GTGTTGTGCACACAGATCACCCACAGTGGCCTATTCGGGCCTGCGTGTTGATTCACTCCC
ACCAGCCGGGCTGAGCTTGGGTTTGTCCCCACGGGGGGAGCAGCTGGACGAGGAAGAGGG
GGCCCGCCAGAAACTGCAGCTGGAGCCAGAAGTACCTATTCTCTAGGTAGCAGCAAACCC
AGTGGTTATTTTGAATGCCTTTTTTGAAGCAGTGTTTCCTGTTCAGGAAAAGAAACTCAT
GGAAGATCGCATTGCTGAGTGCTCCTCTCAGCTGGCTGAGGAGGAGGAAAAGGCCAAAAA
CTTGGCCAAAATCAGGAACAAGCAAGAAGTGATGATCTCGGATTTAGAAGGTTAGTATTC
GAGGTTAGAGAAATTTAGGACTAAGACACGTGAGTCTTTAGATTTTACTTAAATCGAAAC
ACGTGGGAGTTCCCATCGTGGCGCAGAGGAAACAGATCTGTGTAGTATCCATGAGGATGT
GGGTTTGGTCCCTGCCCTCGTTCAGTGGGTAGGGGATTCAGCGATGCCTCGAGCTGTGGT
GCACAAGAACAACGCACTGAAGGTCGTGCGGGAGCTGCAAGCCCAGATCGCTGAGCTTCA
GGAAGACTTTGA------------GTCGCGGAACAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               446-601, + strand, RNAz p=0.932002

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               446-601, + strand, RNAz p=0.932002

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               1-385, gnl|bosTau2|chr2 (77872986-77872601)
               

               
               1-385, gnl|Hg17|chr17 (8354589-8353936)
               


               
               388-655, gnl|bosTau2|chr2 (77872136-77871865)
               

               
               388-655, gnl|Hg17|chr17 (8352826-8352532)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-385, gnl|bosTau2|chr2 (77872986-77872601)
               

               
               1-385, gnl|Hg17|chr17 (8354589-8353936)
               


               
               388-655, gnl|bosTau2|chr2 (77872136-77871865)
               

               
               388-655, gnl|Hg17|chr17 (8352826-8352532)

	1-385, gnl\|bosTau2\|chr2 (77872986-77872601)
	1-385, gnl\|Hg17\|chr17 (8354589-8353936)

	388-655, gnl\|bosTau2\|chr2 (77872136-77871865)
	388-655, gnl\|Hg17\|chr17 (8352826-8352532)