Non-Coding RNA Search

Ss1.1-Pig4-TMW8049O24.5

Sequence:


               
               GGAAGGCGTCTTCTCGCCCCCATGGGCTCCTCTAGGAGAAACCTGGCATCCGCGTGGCGA
AGGCTGCCTGTCACGGCTGCCTTTCCAACCTGAGCCCCGCCTCAGACTTGCCTCCCCGCC
CCCCTCCACTCCCCGCCCGGCGAGGCAGTCCGGCGCCTTTTTCGCCGCGGGCCGCGAGCT
GAGTCCCAGAGAGGGACACCTCCCCCGCCCGCGAGGCTGCCCGGGCCCTCTGAGGCTCCT
TTCTCCTCGCCCGCCCCCGGGCTCAGCTCCTGTCCTCTAGGGTTATTGACCTCCCGGCTC
CTGCCAGCCCGCCCTGCCCCCCCCACGCCCCCTTGACCTGGGCGGCCCGCCGCTTTTTTT
CTGCCCTATGGTTTCCAGTCCTTGGAGCCCCCGTCCCTCCCCCGCCTTAGGTCTTCTCCC
AGGAACGCTTCCTTAACTTTCTCCTCATCCTTCACCGGTGGAGTTTTTTTATTTTTATTT
TTTTAAAAGTTTAGGTGCCTTTGCGGATGACCTCATTTTGATGTCGGGGAAAAAATGATT
TTTTAATATGTGGACACTGCAAAAAAATGTGTTTAAATTATCTTTTTTAAACTTATTCAG
GAGTATTAACCTGGACTTCGACATAGCGTTTGTAAATAAAGGTGTCTGAGCAGATTTTCC
CACTGATTTATTTGTATAAAAAACACCCATCTTTTCAGGCTTTTTTGTAAATCCCCACTT
GTGAAAACTGCGGTTTAGCAGTGACCTCAGCAACCCCTCCGTTTTATTTTTCCCTTTGAA
AAATTTTCTCAGTTTAACTAAGCTACTGATTTGGATTTGTTTTATCTTATCCTAAAGTCT
TTGTTCTTGAAATGAAAGGTATTTTGGGGTTATTTATTATGAAAACAACATGCTCTTAAT
GTTGATTTTACAATATGAAGAGATTATTTAAATAAATTATTGTTTTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGGCGTCTTCTCGCCCCCATGGGCTCCTCTAGGAGAAACCTGGCATCCGCGTGGCGA
AGGCTGCCTGTCACGGCTGCCTTTCCAACCTGAGCCCCGCCTCAGACTTGCCTCCCCGCC
CCCCTCCACTCCCCGCCCGGCGAGGCAGTCCGGCGCCTTTTTCGCCGCGGGCCGCGAGCT
GAGTCCCAGAGAGGGACACCTCCCCCGCCCGCGAGGCTGCCCGGGCCCTCTGAGGCTCCT
TTCTCCTCGCCCGCCCCCGGGCTCAGCTCCTGTCCTCTAGGGTTATTGACCTCCCGGCTC
CTGCCAGCCCGCCCTGCCCCCCCCACGCCCCCTTGACCTGGGCGGCCCGCCGCTTTTTTT
CTGCCCTATGGTTTCCAGTCCTTGGAGCCCCCGTCCCTCCCCCGCCTTAGGTCTTCTCCC
AGGAACGCTTCCTTAACTTTCTCCTCATCCTTCACCGGTGGAGTTTTTTTATTTTTATTT
TTTTAAAAGTTTAGGTGCCTTTGCGGATGACCTCATTTTGATGTCGGGGAAAAAATGATT
TTTTAATATGTGGACACTGCAAAAAAATGTGTTTAAATTATCTTTTTTAAACTTATTCAG
GAGTATTAACCTGGACTTCGACATAGCGTTTGTAAATAAAGGTGTCTGAGCAGATTTTCC
CACTGATTTATTTGTATAAAAAACACCCATCTTTTCAGGCTTTTTTGTAAATCCCCACTT
GTGAAAACTGCGGTTTAGCAGTGACCTCAGCAACCCCTCCGTTTTATTTTTCCCTTTGAA
AAATTTTCTCAGTTTAACTAAGCTACTGATTTGGATTTGTTTTATCTTATCCTAAAGTCT
TTGTTCTTGAAATGAAAGGTATTTTGGGGTTATTTATTATGAAAACAACATGCTCTTAAT
GTTGATTTTACAATATGAAGAGATTATTTAAATAAATTATTGTTTTCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               724-842, - strand, RNAz p=0.888144

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               724-842, - strand, RNAz p=0.888144

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               381-948, gnl|bosTau2|chr2 (17575030-17575600)
               

               
               381-948, gnl|Hg17|chr2 (172790242-172789678)
               

               
               381-948, gnl|Mm7|chr2 (71387841-71387123)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               381-948, gnl|bosTau2|chr2 (17575030-17575600)
               

               
               381-948, gnl|Hg17|chr2 (172790242-172789678)
               

               
               381-948, gnl|Mm7|chr2 (71387841-71387123)

	381-948, gnl\|bosTau2\|chr2 (17575030-17575600)
	381-948, gnl\|Hg17\|chr2 (172790242-172789678)
	381-948, gnl\|Mm7\|chr2 (71387841-71387123)