Non-Coding RNA Search

Ss1.1-Pig4-TMW8049P08.3

Sequence:


               
               CCACCTTGGCACCGCGGCCGGCGTCCTCTGGTGGCGGAGAAAGAGCACTACGAGCGACTT
TCGGACCGAATCGGCGCGCTCCTCTGATCCAAACAGGCGGGGCTGGCCTGGAGCTAAGAG
AAAGAGATAAGAGTGGACAAGGCAGGCCAAGGTGGGGTGTGTGTGTGTGTGTGCCAGGGG
CAGCCTGAGAGGATAAAAAGTGGCCAAGAAGGAGCCAAGACTCAATGAGCAACAATAGAA
TTGCTTCTGCCACCGTGGCGGGGTTGATGCCCTGAACCCCCAGACCTCAGAGGGGTGGAA
AGTGAGGTTGGAGACCTTCCTCACTGGCACTTTGATTTTTTTAGAAAAAATTTTTTTCAC
CCTAGTTCGGTTGGGTGCTCCGTTTTACGGGGCCCCAAGTTTATTTTAAGAAGCCGCCAC
CGTGTTATGGGCGTGCGCAACTGCCTCGACGGCAATAATATGTCAGGACAACGCAATAGC
CCCCCTGAACACGGGGAGCAGCCCGAGCAACCACCCTTGGAGGCCCCAGGGGCAGCTGCC
TCCGGTGCTGGGACTGGCACAGCCGAAGAGATGGAGACCGAACCGCCTCACAGCGAGCCC
ATCCCCATCAAGACTGAAGGCGAGGCCAGTGGACCCCCAGAAGTCTCCCGGCCCAACCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACCTTGGCACCGCGGCCGGCGTCCTCTGGTGGCGGAGAAAGAGCACTACGAGCGACTT
TCGGACCGAATCGGCGCGCTCCTCTGATCCAAACAGGCGGGGCTGGCCTGGAGCTAAGAG
AAAGAGATAAGAGTGGACAAGGCAGGCCAAGGTGGGGTGTGTGTGTGTGTGTGCCAGGGG
CAGCCTGAGAGGATAAAAAGTGGCCAAGAAGGAGCCAAGACTCAATGAGCAACAATAGAA
TTGCTTCTGCCACCGTGGCGGGGTTGATGCCCTGAACCCCCAGACCTCAGAGGGGTGGAA
AGTGAGGTTGGAGACCTTCCTCACTGGCACTTTGATTTTTTTAGAAAAAATTTTTTTCAC
CCTAGTTCGGTTGGGTGCTCCGTTTTACGGGGCCCCAAGTTTATTTTAAGAAGCCGCCAC
CGTGTTATGGGCGTGCGCAACTGCCTCGACGGCAATAATATGTCAGGACAACGCAATAGC
CCCCCTGAACACGGGGAGCAGCCCGAGCAACCACCCTTGGAGGCCCCAGGGGCAGCTGCC
TCCGGTGCTGGGACTGGCACAGCCGAAGAGATGGAGACCGAACCGCCTCACAGCGAGCCC
ATCCCCATCAAGACTGAAGGCGAGGCCAGTGGACCCCCAGAAGTCTCCCGGCCCAACCTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-613, - strand, RNAz p=0.982155

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-613, - strand, RNAz p=0.982155

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               312-402, + strand, RNAmicro p=0.988444

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               312-402, + strand, RNAmicro p=0.988444

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-660, gnl|bosTau2|chr13 (37912868-37912198)
               

               
               1-660, gnl|Hg17|chr20 (56861292-56861949)
               

               
               1-660, gnl|Mm7|chr2 (174041849-174042501)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-660, gnl|bosTau2|chr13 (37912868-37912198)
               

               
               1-660, gnl|Hg17|chr20 (56861292-56861949)
               

               
               1-660, gnl|Mm7|chr2 (174041849-174042501)

	1-660, gnl\|bosTau2\|chr13 (37912868-37912198)
	1-660, gnl\|Hg17\|chr20 (56861292-56861949)
	1-660, gnl\|Mm7\|chr2 (174041849-174042501)