Non-Coding RNA Search

Ss1.1-Pig4-TMW8050E10.5

Sequence:


               
               GGCCAGACAACTGTCTGTTGCTGGTCATTGCCGCCAGGNAGTCCATCCCTGAGGACCTGT
CCCGGAGGTTCCTGGCCTATCTTTCTCAGGAGGGAAGGTTCTGGCCCTGGCATCGTCCTT
CACGCTTGCTGGCTTCCGAGTGACAAGCAAGGCCCTGCTGCAGGACACGGTCCAGAGCTT
GGTTTTCTACAAGGCTGACCAGAGCCAGGTGAAGCTGAGCATCCTGAGCAGTGGCTGCAT
TTACGAGGGGGGTCCCGTGGAGCCGCTTGGCCTGGGCCAGCTCCAGGGCCACCTGGACAG
TGAGGACAAAGACAGGCTGATTGTGCAAGTGCCTTTTGGGACACGTGGAGGAGAAGCTGT
TCTTTGCCAGGTGCACTTGGAACTACCTCCCAGTTCTCCAGCGGTACAAACTCAAGAGGA
CTTCGATCTGCTCAAATCAAGCAATTTTAGAAGATACGAAGTCCTTAGGGAGATCCTGAC
CACCCTGGGCCTGAGCTGTGACGTGAAGCAAGTTCCTGCCTTAACCCCTCTCTACCTGCT
GTCCGCCGAGGAAATCCGGGATCCTCTTATGCAGTGGCTGGGGAAACACGTGGATCCTGA
AGGAGTTATAACATCTAGCAAGCTCTCCCTTAAATTCGTTTCATCCTACACATCTGAGGT
GGACATCACCCCATCTGCCATACCTGTGGTGACTGGCACGGCGGCCTTCTCCTCAGAAAA
TTTTAACTTTGAGATCTACCGACAGAATTTGCAGACCAAGAAACTTGGAAAAATAATTCT
GTTTGCCGAAGTGACATCCACCACAATGAGTCTTCTGGACGGGTTGATGTTTCAGATGCC
ACAGGAAATGGGTTTAATAGCCATCGCCGGCCGCCAAACGCAGGGCAAAGGGCGGGGAAG
CAATGCTTGGCTGAGCCCCGTGGGGTGTGCTCTTTCTACGCTGCTTCTCACCATCCCACT
CTGATTGAATGCATGTGCTGATGGTTGAGAGGACTCACATGAGGAGTTGTGTGTTTTCCC
ACACCCTGACATGGAGAAAGAGGGAGGGAAATTGATGCAAAGATTGAACCTTGGTAGAAT
GAAAGCATCCTCTCAAACTGAGATGTTTATTAATTAGCTGACATCCGCTTGCGATGGTTT
TAATGTTCCGTTACCTACATCTTGTAAATTCTTTCTGACACGCTCTAGGCACTGCGGTGT
GTGAGCAATAACTATGTCACAGAGGCATTTATTTTCCTGAAGGTTCTCTGTGAGGTGCCT
TCTGTGTCTATACTGAGTATCACATGGGGGGAGTCCTTGCCTCTGCCAGCCCCCACCTCA
GCTGGCACTGGAATTTGCATGGAGTGAGCAAAGATCACCGCCTCTTCACAAAGTGACCAC
AGAGAGGCCGAGGGCTGCCCAGAGCTTCCACCGCCTGCTGACCCACATCCTCCCAGAGCC
CACCTGGGGTCCAGCCGCAGGAGATCCAGCTCAGTCATAGAGGAGGCCACTGGCCCCGCC
CCTCCCCACCTTCAGCTGGCACCAAGCCCGCCCAAACATGCTTTTTACTCTCAGAGGCCC
TTATGCCCTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCAGACAACTGTCTGTTGCTGGTCATTGCCGCCAGGNAGTCCATCCCTGAGGACCTGT
CCCGGAGGTTCCTGGCCTATCTTTCTCAGGAGGGAAGGTTCTGGCCCTGGCATCGTCCTT
CACGCTTGCTGGCTTCCGAGTGACAAGCAAGGCCCTGCTGCAGGACACGGTCCAGAGCTT
GGTTTTCTACAAGGCTGACCAGAGCCAGGTGAAGCTGAGCATCCTGAGCAGTGGCTGCAT
TTACGAGGGGGGTCCCGTGGAGCCGCTTGGCCTGGGCCAGCTCCAGGGCCACCTGGACAG
TGAGGACAAAGACAGGCTGATTGTGCAAGTGCCTTTTGGGACACGTGGAGGAGAAGCTGT
TCTTTGCCAGGTGCACTTGGAACTACCTCCCAGTTCTCCAGCGGTACAAACTCAAGAGGA
CTTCGATCTGCTCAAATCAAGCAATTTTAGAAGATACGAAGTCCTTAGGGAGATCCTGAC
CACCCTGGGCCTGAGCTGTGACGTGAAGCAAGTTCCTGCCTTAACCCCTCTCTACCTGCT
GTCCGCCGAGGAAATCCGGGATCCTCTTATGCAGTGGCTGGGGAAACACGTGGATCCTGA
AGGAGTTATAACATCTAGCAAGCTCTCCCTTAAATTCGTTTCATCCTACACATCTGAGGT
GGACATCACCCCATCTGCCATACCTGTGGTGACTGGCACGGCGGCCTTCTCCTCAGAAAA
TTTTAACTTTGAGATCTACCGACAGAATTTGCAGACCAAGAAACTTGGAAAAATAATTCT
GTTTGCCGAAGTGACATCCACCACAATGAGTCTTCTGGACGGGTTGATGTTTCAGATGCC
ACAGGAAATGGGTTTAATAGCCATCGCCGGCCGCCAAACGCAGGGCAAAGGGCGGGGAAG
CAATGCTTGGCTGAGCCCCGTGGGGTGTGCTCTTTCTACGCTGCTTCTCACCATCCCACT
CTGATTGAATGCATGTGCTGATGGTTGAGAGGACTCACATGAGGAGTTGTGTGTTTTCCC
ACACCCTGACATGGAGAAAGAGGGAGGGAAATTGATGCAAAGATTGAACCTTGGTAGAAT
GAAAGCATCCTCTCAAACTGAGATGTTTATTAATTAGCTGACATCCGCTTGCGATGGTTT
TAATGTTCCGTTACCTACATCTTGTAAATTCTTTCTGACACGCTCTAGGCACTGCGGTGT
GTGAGCAATAACTATGTCACAGAGGCATTTATTTTCCTGAAGGTTCTCTGTGAGGTGCCT
TCTGTGTCTATACTGAGTATCACATGGGGGGAGTCCTTGCCTCTGCCAGCCCCCACCTCA
GCTGGCACTGGAATTTGCATGGAGTGAGCAAAGATCACCGCCTCTTCACAAAGTGACCAC
AGAGAGGCCGAGGGCTGCCCAGAGCTTCCACCGCCTGCTGACCCACATCCTCCCAGAGCC
CACCTGGGGTCCAGCCGCAGGAGATCCAGCTCAGTCATAGAGGAGGCCACTGGCCCCGCC
CCTCCCCACCTTCAGCTGGCACCAAGCCCGCCCAAACATGCTTTTTACTCTCAGAGGCCC
TTATGCCCTCCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61842197|ref|XP_606309.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61842197|ref|XP_606309.1|

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               1-372, gnl|bosTau2|chr1 (102591184-102590812)
               

               
               1-372, gnl|Hg17|chr21 (37230986-37230617)
               

               
               1-372, gnl|Mm7|chr16 (94557057-94556697)
               


               
               822-1569, gnl|bosTau2|chr1 (96826773-96825984)
               

               
               822-1569, gnl|Hg17|chr21 (37061457-37060727)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-372, gnl|bosTau2|chr1 (102591184-102590812)
               

               
               1-372, gnl|Hg17|chr21 (37230986-37230617)
               

               
               1-372, gnl|Mm7|chr16 (94557057-94556697)
               


               
               822-1569, gnl|bosTau2|chr1 (96826773-96825984)
               

               
               822-1569, gnl|Hg17|chr21 (37061457-37060727)

	1-372, gnl\|bosTau2\|chr1 (102591184-102590812)
	1-372, gnl\|Hg17\|chr21 (37230986-37230617)
	1-372, gnl\|Mm7\|chr16 (94557057-94556697)

	822-1569, gnl\|bosTau2\|chr1 (96826773-96825984)
	822-1569, gnl\|Hg17\|chr21 (37061457-37060727)