Non-Coding RNA Search

Ss1.1-Pig4-TMW8050F22.3

Sequence:


               
               TGGCCTTGGATGACGACACGCTGTCCTTGGATGAGTCTGGGCCGCAAGTCCCAAGTGGAT
CTGTCCAGGGGCCTCGCCCACCAGAGGGCCCATGACATTCTGGCTCGGGATGGGCCCAAC
GCCCTCACCCGGCCCCCAACAACCCCGGAGTGGGTCAAGTTCTGTCGCCAGCTTTTAGGG
GGTTTCTCCATCCTGCTGTGGATCGGGGCCATCCTCTGCTTCCTGGCCTATGGCATCCAG
GCTGCCATGGAGGATGAACCATCCAATGACAACCTCTACCTGGGTGTGGTGCTGGCAGCT
GTGGTCATTGTCACGGGCTGCTTCTCCTACTACCAGGAAGCCAAGAGCTCCAAGATCATG
GATTCTTTCAAGAACATGGTGCCTCAGCAAGCCCTCGTGGTGCGGGAAGGAGAGAAGATG
CAGATCAACGCAGAGGAGGTGGTGGTGGTAGACCTGGTGGAGGTCAAACCGCCCTCCCCT
CTCCTAGTCTGGAAGCTCCGACCACCGAGCAGACCTCAAACGCTGCACTGAGTGTCCATC
TCGTCATGTGCCCCTCCTCGCCAGGGCCACCCCAGAGCCCTGGACTCATCAATAAACTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCCTTGGATGACGACACGCTGTCCTTGGATGAGTCTGGGCCGCAAGTCCCAAGTGGAT
CTGTCCAGGGGCCTCGCCCACCAGAGGGCCCATGACATTCTGGCTCGGGATGGGCCCAAC
GCCCTCACCCGGCCCCCAACAACCCCGGAGTGGGTCAAGTTCTGTCGCCAGCTTTTAGGG
GGTTTCTCCATCCTGCTGTGGATCGGGGCCATCCTCTGCTTCCTGGCCTATGGCATCCAG
GCTGCCATGGAGGATGAACCATCCAATGACAACCTCTACCTGGGTGTGGTGCTGGCAGCT
GTGGTCATTGTCACGGGCTGCTTCTCCTACTACCAGGAAGCCAAGAGCTCCAAGATCATG
GATTCTTTCAAGAACATGGTGCCTCAGCAAGCCCTCGTGGTGCGGGAAGGAGAGAAGATG
CAGATCAACGCAGAGGAGGTGGTGGTGGTAGACCTGGTGGAGGTCAAACCGCCCTCCCCT
CTCCTAGTCTGGAAGCTCCGACCACCGAGCAGACCTCAAACGCTGCACTGAGTGTCCATC
TCGTCATGTGCCCCTCCTCGCCAGGGCCACCCCAGAGCCCTGGACTCATCAATAAACTCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               155-273, + strand, RNAz p=0.636144

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               155-273, + strand, RNAz p=0.636144

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               69-273, gnl|bosTau2|chr18 (44727333-44727129)
               

               
               69-273, gnl|Hg17|chr19 (47184132-47183928)
               

               
               69-273, gnl|Mm7|chr7 (21790268-21790064)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               69-273, gnl|bosTau2|chr18 (44727333-44727129)
               

               
               69-273, gnl|Hg17|chr19 (47184132-47183928)
               

               
               69-273, gnl|Mm7|chr7 (21790268-21790064)

	69-273, gnl\|bosTau2\|chr18 (44727333-44727129)
	69-273, gnl\|Hg17\|chr19 (47184132-47183928)
	69-273, gnl\|Mm7\|chr7 (21790268-21790064)