Non-Coding RNA Search

Ss1.1-Pig4-TMW8050G08.5

Sequence:


               
               TCGTTGTGCTTCACCTTTTCCTGCTCCGCGCCCTGGGGTTAAGTTCGGCCCCGGAAACCC
GGCGGATAGACGCGGCCTCTCTCCTTCGTGGGTGTGGTGGCCCGCGGAAGAGGAGAAGCG
AGCGGCCGGTCAACGGGCCTCGAGGAGCTGTGTTTCCGCGGCCACCCGGCGCGACACCCT
CCCCGGACCCAGCATGTAGGTACCGGCGAGTTGCCATGAACTCCGGAGCCATGAGGATCC
ACAGCAGAGGACATTTCCAGGGTGGAATCCAGGTTAAAAATGAGAAAAACCGACCATCTT
TGAAATCTCTGAAAACTGATAACAAACCAGAAAAATCCAAATATAAGCCACTCTGGGGAA
AAGTGTTTTATATTGACTTACCTTCTGGTGCCCTGTCTGAAAAACTGCAAAAGGACATTA
AGGATCTAGGAGGGCGAGTTGAAGAATTTCTCAGCAAAGATATCAATTATCTTATTTCAA
ATAAAAAGGAAGCTAAATTTGCACAAACCTTGGGACGAATTTCTCCTGTACCAAGTCCAG
AATCTGCATATGCTGCAGAAACCACATCACCTCATCCCAGCCATGATGGAAGTTCATTTA
AGTCTCCAGATTCAGTGTGTTTGAGCAGAGGAAAATTATTAGTTGAAAAAGCTATCAAGG
ACCATGATTTTATTCCTTCAAATAGTATATTATCAAATGCCTTATCATGGGGCGTAAAAA
TTCTTCATATTGATGATATTAGGTATTACATTGAACAAAAGAAAAAAGAATTATATCTCC
TCAAGAAATCAAGCACTTCTCTAAGAGATGTGGGGAAAAGAGTAGGTGTTGGTGCACAGA
AAGGAAGAACAGGTGGACTCAAAAAGCCTTTTGTAAAGGTGGAAGATATGAGCCAGCTTT
ATAGGCCATTCTATCTTCAGCTGACCAATATGCCTTTTATAAATTATTCTATTCAGAAGC
CCTCAAGTCCTTTTGATGCAGATAAACCACCTAACACCCAAAAGCAAACTCAGGTTAAGC
TAAGAATCCAAACAGATGGTGATAAATGTGGTGGAGTCCCAGTTCAACTCCAGTTGAAAG
AGAAGAAGAAAAAAGGATACTGTGAATGTTGCTTGCAGAAATATGAAGATCTTGACAGTG
TAAATCATCTTCTAAGTGAGCAACACAGAAACTTTGCCCAGAGTAATCACTATCAAGTTG
TTGATGACATTGTATCTAAGTTAGTTTTTGACTTTGTGGAATATGAAAGGGACACGCCTA
AAAAGAAAAGAATAAAATACAGTGTTGGATCCCTTTCTCCTATTACTACAAATTTTCCAA
GAAAGTCTGAACCTAAAAAAAAGCTGGAAGTGCAACATAATTCTCAGAAAGATTCCAGGG
AAAATAACATACCGGTGATGGAGCAGACCCTCCTACATAAAGAAACCCTGGAACCTGAAA
AAAGGTTTGTGTCTACCTCAGAACACATCCCTCACCCTTCAAGTGAATTGAGAGGACTTG
AGAAAACATCTAATAAATGTTCCATGTTAAATCCAGCTGAAAATGATATAAAACAAAATT
TTACACCTCTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGTTGTGCTTCACCTTTTCCTGCTCCGCGCCCTGGGGTTAAGTTCGGCCCCGGAAACCC
GGCGGATAGACGCGGCCTCTCTCCTTCGTGGGTGTGGTGGCCCGCGGAAGAGGAGAAGCG
AGCGGCCGGTCAACGGGCCTCGAGGAGCTGTGTTTCCGCGGCCACCCGGCGCGACACCCT
CCCCGGACCCAGCATGTAGGTACCGGCGAGTTGCCATGAACTCCGGAGCCATGAGGATCC
ACAGCAGAGGACATTTCCAGGGTGGAATCCAGGTTAAAAATGAGAAAAACCGACCATCTT
TGAAATCTCTGAAAACTGATAACAAACCAGAAAAATCCAAATATAAGCCACTCTGGGGAA
AAGTGTTTTATATTGACTTACCTTCTGGTGCCCTGTCTGAAAAACTGCAAAAGGACATTA
AGGATCTAGGAGGGCGAGTTGAAGAATTTCTCAGCAAAGATATCAATTATCTTATTTCAA
ATAAAAAGGAAGCTAAATTTGCACAAACCTTGGGACGAATTTCTCCTGTACCAAGTCCAG
AATCTGCATATGCTGCAGAAACCACATCACCTCATCCCAGCCATGATGGAAGTTCATTTA
AGTCTCCAGATTCAGTGTGTTTGAGCAGAGGAAAATTATTAGTTGAAAAAGCTATCAAGG
ACCATGATTTTATTCCTTCAAATAGTATATTATCAAATGCCTTATCATGGGGCGTAAAAA
TTCTTCATATTGATGATATTAGGTATTACATTGAACAAAAGAAAAAAGAATTATATCTCC
TCAAGAAATCAAGCACTTCTCTAAGAGATGTGGGGAAAAGAGTAGGTGTTGGTGCACAGA
AAGGAAGAACAGGTGGACTCAAAAAGCCTTTTGTAAAGGTGGAAGATATGAGCCAGCTTT
ATAGGCCATTCTATCTTCAGCTGACCAATATGCCTTTTATAAATTATTCTATTCAGAAGC
CCTCAAGTCCTTTTGATGCAGATAAACCACCTAACACCCAAAAGCAAACTCAGGTTAAGC
TAAGAATCCAAACAGATGGTGATAAATGTGGTGGAGTCCCAGTTCAACTCCAGTTGAAAG
AGAAGAAGAAAAAAGGATACTGTGAATGTTGCTTGCAGAAATATGAAGATCTTGACAGTG
TAAATCATCTTCTAAGTGAGCAACACAGAAACTTTGCCCAGAGTAATCACTATCAAGTTG
TTGATGACATTGTATCTAAGTTAGTTTTTGACTTTGTGGAATATGAAAGGGACACGCCTA
AAAAGAAAAGAATAAAATACAGTGTTGGATCCCTTTCTCCTATTACTACAAATTTTCCAA
GAAAGTCTGAACCTAAAAAAAAGCTGGAAGTGCAACATAATTCTCAGAAAGATTCCAGGG
AAAATAACATACCGGTGATGGAGCAGACCCTCCTACATAAAGAAACCCTGGAACCTGAAA
AAAGGTTTGTGTCTACCTCAGAACACATCCCTCACCCTTCAAGTGAATTGAGAGGACTTG
AGAAAACATCTAATAAATGTTCCATGTTAAATCCAGCTGAAAATGATATAAAACAAAATT
TTACACCTCTAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|4996098|dbj|BAA78327.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|4996098|dbj|BAA78327.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               95-371, - strand, RNAz p=0.816047

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               95-371, - strand, RNAz p=0.816047

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               95-488, gnl|bosTau2|chr5 (20857015-20857378)
               

               
               95-488, gnl|Hg17|chr10 (65600736-65600345)
               


               
               636-895, gnl|bosTau2|chr5 (20857394-20857644)
               

               
               636-895, gnl|Hg17|chr10 (65600304-65599940)
               


               
               1309-1525, gnl|bosTau2|chr5 (20857739-20857961)
               

               
               1309-1525, gnl|Hg17|chr10 (65599657-65599439)
               

               
               1309-1525, gnl|Mm7|chr5 (8435768-8435551)

Aligned organism(s): 7 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               95-488, gnl|bosTau2|chr5 (20857015-20857378)
               

               
               95-488, gnl|Hg17|chr10 (65600736-65600345)
               


               
               636-895, gnl|bosTau2|chr5 (20857394-20857644)
               

               
               636-895, gnl|Hg17|chr10 (65600304-65599940)
               


               
               1309-1525, gnl|bosTau2|chr5 (20857739-20857961)
               

               
               1309-1525, gnl|Hg17|chr10 (65599657-65599439)
               

               
               1309-1525, gnl|Mm7|chr5 (8435768-8435551)

	95-488, gnl\|bosTau2\|chr5 (20857015-20857378)
	95-488, gnl\|Hg17\|chr10 (65600736-65600345)

	636-895, gnl\|bosTau2\|chr5 (20857394-20857644)
	636-895, gnl\|Hg17\|chr10 (65600304-65599940)

	1309-1525, gnl\|bosTau2\|chr5 (20857739-20857961)
	1309-1525, gnl\|Hg17\|chr10 (65599657-65599439)
	1309-1525, gnl\|Mm7\|chr5 (8435768-8435551)