Non-Coding RNA Search

Ss1.1-Pig4-TMW8050G21.5

Sequence:


               
               GTTTGTTATGCGGGAATTGATACAGATCCTGAGCTGAAATATCCAAAAGGTGCTGGTCGA
GTTGCTTTCTCCAATCAGCAGAGCTATATTGCTGCCATTAGTGCTCGGTTCGTTCAGCTT
CAGCACGGTGATATTGATAAACGCGTGGAGGTAAAGCCATATGTGCTAGATGACCAGATG
TGTGATGAGTGCCAGGGCGCACGCTGTGGTGGAAAATTTGCTCCCTTTTTTTGTGCCAAT
GTCACTTGCCTGCAGTATTACTGTGAGTTTTGTTGGGCAAATATCCACTCTCGTGCAGGA
CGTGAGTTCCATAAGCCATTGGTAAAGGAAGGTGCTGATCGCCCACGTCAGATCCACTTC
CGCTGGAACTAAGAAGAGCAAACCGGCCTCTGTTTAACAAGGAGAGAAAGGGTGCATGTG
GCTTCCTGTGTCTGAAGATACTGACATGCAGAAGAAATAAGTGCATTCTTCTGCTTTCAC
CCCAGCTATCAATACATGCATCTTTATCAGCAGCCAAAACACTACAAGCCTCTTGTTTTT
CACCAAAACCCTACATCTCAGGCTTACTAATTTTTGTGATATTTTCATGTTAAAATAAAA
TGTTTTTTTGTATTTCCTCCAAGTTATTTTTATATGTAAAGTTAAAATTAGATACGAGAA
TGTGTTGCGTAGGGGCAAACAGTCTGCTGCTATGTAGTGGGTGAAGCGTGCACTTATTTC
TAAACGTGGGTTTTTAACTTCAAGATCTGCCCCAGTAATTTACCAAAGGTAGCAAAATAA
TAGTGAAGATGGAATATGTCTGCTACAAATGCTTATTTTTATTGTTGCTATTTTCAGTGT
ATACATAAACTAAAAATTAGGGTTGATTTTTTTGCTCTCCATTTTGACTTGCAAGAAATA
ATACCTCAAGATAATCTGATTTATTAGCTATTTTTAAACATTTTTAATCACAAGCTGTAT
TAGCTTTGCTGCTATATAGGTGTTATGTGTAAATGCCACCTATTAATACGGGATTGAAAA
CGTTAGAGACACACTGCATTGCGGATAAAATGCAGGCAGCACAATATGGCCTAAACTGCC
ATAGTTTTAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTGTTATGCGGGAATTGATACAGATCCTGAGCTGAAATATCCAAAAGGTGCTGGTCGA
GTTGCTTTCTCCAATCAGCAGAGCTATATTGCTGCCATTAGTGCTCGGTTCGTTCAGCTT
CAGCACGGTGATATTGATAAACGCGTGGAGGTAAAGCCATATGTGCTAGATGACCAGATG
TGTGATGAGTGCCAGGGCGCACGCTGTGGTGGAAAATTTGCTCCCTTTTTTTGTGCCAAT
GTCACTTGCCTGCAGTATTACTGTGAGTTTTGTTGGGCAAATATCCACTCTCGTGCAGGA
CGTGAGTTCCATAAGCCATTGGTAAAGGAAGGTGCTGATCGCCCACGTCAGATCCACTTC
CGCTGGAACTAAGAAGAGCAAACCGGCCTCTGTTTAACAAGGAGAGAAAGGGTGCATGTG
GCTTCCTGTGTCTGAAGATACTGACATGCAGAAGAAATAAGTGCATTCTTCTGCTTTCAC
CCCAGCTATCAATACATGCATCTTTATCAGCAGCCAAAACACTACAAGCCTCTTGTTTTT
CACCAAAACCCTACATCTCAGGCTTACTAATTTTTGTGATATTTTCATGTTAAAATAAAA
TGTTTTTTTGTATTTCCTCCAAGTTATTTTTATATGTAAAGTTAAAATTAGATACGAGAA
TGTGTTGCGTAGGGGCAAACAGTCTGCTGCTATGTAGTGGGTGAAGCGTGCACTTATTTC
TAAACGTGGGTTTTTAACTTCAAGATCTGCCCCAGTAATTTACCAAAGGTAGCAAAATAA
TAGTGAAGATGGAATATGTCTGCTACAAATGCTTATTTTTATTGTTGCTATTTTCAGTGT
ATACATAAACTAAAAATTAGGGTTGATTTTTTTGCTCTCCATTTTGACTTGCAAGAAATA
ATACCTCAAGATAATCTGATTTATTAGCTATTTTTAAACATTTTTAATCACAAGCTGTAT
TAGCTTTGCTGCTATATAGGTGTTATGTGTAAATGCCACCTATTAATACGGGATTGAAAA
CGTTAGAGACACACTGCATTGCGGATAAAATGCAGGCAGCACAATATGGCCTAAACTGCC
ATAGTTTTAGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6N013_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6N013_HUMAN

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               424-542, - strand, RNAz p=0.757706
               

               
               623-741, - strand, RNAz p=0.867072
               

               
               941-1091, + strand, RNAz p=0.891904

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               424-542, - strand, RNAz p=0.757706
               

               
               623-741, - strand, RNAz p=0.867072
               

               
               941-1091, + strand, RNAz p=0.891904

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_182646, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_182646, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               145-1091, gnl|bosTau2|chr6 (63493783-63492837)
               

               
               145-1091, gnl|Hg17|chr4 (14744046-14744994)
               

               
               145-1091, gnl|Mm7|chr5 (42605329-42606274)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               145-1091, gnl|bosTau2|chr6 (63493783-63492837)
               

               
               145-1091, gnl|Hg17|chr4 (14744046-14744994)
               

               
               145-1091, gnl|Mm7|chr5 (42605329-42606274)

	424-542, - strand, RNAz p=0.757706
	623-741, - strand, RNAz p=0.867072
	941-1091, + strand, RNAz p=0.891904

	145-1091, gnl\|bosTau2\|chr6 (63493783-63492837)
	145-1091, gnl\|Hg17\|chr4 (14744046-14744994)
	145-1091, gnl\|Mm7\|chr5 (42605329-42606274)