Non-Coding RNA Search

Ss1.1-Pig4-TMW8050I07.5

Sequence:


               
               GAGCCTGCTTCGTATGGATGGCTGGGTGTGTGGCGTGGCGGGCCCGAGATTGGCAGAGGC
ACCGGAGAGCCTCTGTTCTTTCCTATGATCTGTGCCACCCCCTGCTCAGCCTCTGAGGCT
CTTCAGACTCTTTCCCCCCCCGCCCCCCCCACATTGCTTTTCTCTTTTCCCTTCTTCTTC
TTCTTTTTTTTTTTCATTTAATAGTGAAGGGTTAAAAAAAAAAAAAAAAAAAGGCGCAGC
CAGGGCTGACAGGTATCATTCAGCCGCCCTGGCTTGTGAGGGGTGGTATAAATGAATCTC
AGGGCCCCTGGCTTCACATGATTCAAACATGCGTTATTGAAGATGGATGTTCCTTAAAAA
AAGATTGATGGTGGATGCCGGGCTTAGGGTGCCATTTATCATTTTGAATATTATTTAGAC
TTGCCGTGTAAACCTGTAACTTGAGAGTTGGACGAGCTGGGGCAGGGTAGGGGCCTGGGA
GTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCCATTGATCGGCCTTGGATTATCATTGCTG
CTGACCAGACACGGGTCCTCCCCTTTACAAGATAGAAGACACCCCGCCCATCAAGGGGGG
ATGGTTGAATTTTGAATAATTTCCAAGGACACAGGGAAAAAGGAAGTATCTGTGATTTAC
ACGAAAGCTCACAGGCAACTTCTCTCTCTCTCTTCTTCCTCTCTCTCTTCCCCGACAGAG
GCAGTCACGTATGAAACATTAAAATATAAACAGAGCCGTAGTAGCCGAAGCCAGGACCCT
TGTCTGATTTTTTAAACTCTGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCCTGCTTCGTATGGATGGCTGGGTGTGTGGCGTGGCGGGCCCGAGATTGGCAGAGGC
ACCGGAGAGCCTCTGTTCTTTCCTATGATCTGTGCCACCCCCTGCTCAGCCTCTGAGGCT
CTTCAGACTCTTTCCCCCCCCGCCCCCCCCACATTGCTTTTCTCTTTTCCCTTCTTCTTC
TTCTTTTTTTTTTTCATTTAATAGTGAAGGGTTAAAAAAAAAAAAAAAAAAAGGCGCAGC
CAGGGCTGACAGGTATCATTCAGCCGCCCTGGCTTGTGAGGGGTGGTATAAATGAATCTC
AGGGCCCCTGGCTTCACATGATTCAAACATGCGTTATTGAAGATGGATGTTCCTTAAAAA
AAGATTGATGGTGGATGCCGGGCTTAGGGTGCCATTTATCATTTTGAATATTATTTAGAC
TTGCCGTGTAAACCTGTAACTTGAGAGTTGGACGAGCTGGGGCAGGGTAGGGGCCTGGGA
GTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCCATTGATCGGCCTTGGATTATCATTGCTG
CTGACCAGACACGGGTCCTCCCCTTTACAAGATAGAAGACACCCCGCCCATCAAGGGGGG
ATGGTTGAATTTTGAATAATTTCCAAGGACACAGGGAAAAAGGAAGTATCTGTGATTTAC
ACGAAAGCTCACAGGCAACTTCTCTCTCTCTCTTCTTCCTCTCTCTCTTCCCCGACAGAG
GCAGTCACGTATGAAACATTAAAATATAAACAGAGCCGTAGTAGCCGAAGCCAGGACCCT
TGTCTGATTTTTTAAACTCTGGGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               642-733, - strand, RNAz p=0.798061

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               642-733, - strand, RNAz p=0.798061

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-171, gnl|bosTau2|chr18 (34853681-34853843)
               

               
               1-171, gnl|Hg17|chr19 (36522148-36521985)
               

               
               1-171, gnl|Mm7|chr7 (33599425-33599617)
               


               
               223-803, gnl|bosTau2|chr18 (34853866-34854425)
               

               
               223-803, gnl|Hg17|chr19 (36521954-36521353)
               

               
               223-803, gnl|Mm7|chr7 (33599635-33600269)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-171, gnl|bosTau2|chr18 (34853681-34853843)
               

               
               1-171, gnl|Hg17|chr19 (36522148-36521985)
               

               
               1-171, gnl|Mm7|chr7 (33599425-33599617)
               


               
               223-803, gnl|bosTau2|chr18 (34853866-34854425)
               

               
               223-803, gnl|Hg17|chr19 (36521954-36521353)
               

               
               223-803, gnl|Mm7|chr7 (33599635-33600269)

	1-171, gnl\|bosTau2\|chr18 (34853681-34853843)
	1-171, gnl\|Hg17\|chr19 (36522148-36521985)
	1-171, gnl\|Mm7\|chr7 (33599425-33599617)

	223-803, gnl\|bosTau2\|chr18 (34853866-34854425)
	223-803, gnl\|Hg17\|chr19 (36521954-36521353)
	223-803, gnl\|Mm7\|chr7 (33599635-33600269)