Ss1.1-Pig4-TMW8050N13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCTCGAGCTCGAGCCGCGATCAAAGAACCATAACATTTGCATCATCTAAAAACGAAG AGCTACAAGGAAATGATTCCAAAATTCTTCCTTCTGCAAAAGAACTGACTTCTCAGAAGG GAAGTGTAAGTGAGACAATTGTCATTGATGATGAAGAGGACATGGAAACCAATCAAGGGC AAGAGAAAAATGCCTCCAGTTTTATTGAACGGAGACCTCCCGAAACGAAAAACAGAACCA GTGATGTGGATTTCTCCACTCCCAGTTTTTCAAGAAGTAAGGTAAATGCAGGCGTGGGTA ATAGTGGTATCACCACCGAACCAGACTCTGAAATTCAGATCGCCGATGTTACAACCTTGG AGACAGGTGTCAGCTCTGTGAGCGACGGCCAGTTGGAAAGTACTGACGGGCAAGACATGA ACTTAATGATCACACACGTAACATCCCTGCAGAATACCAACCTGGGAGAGGTCGCGAACG GACTGCAGTCAAGTAACTTCGGTGTTAACATACAAACGTTCACCCCGTCTTTAACGTCAC AGACCAAGGCTGCAGTAGGACCTTTTAATCCCGGTAGAATGAATGGGGCAGGAGATGTAT TTCAGAACGGAGAGTCTGCAACACATCACAATCCTGATTCTTGGATCTCCCAGTCAGCGT CCTTTCCCCGGAACCAGAAGCAGCCAGGGGTGGATTCTTTATCTCCAGTGGCCTCACTTC CTAAACAGATTTTCCAGCCTTCTGCCCAGCAGCAACCCACTAAACCAGTTAAAGTCACTT GTGCAAACTGCAAAAAACCTTTGCAGAAGGGACAGACAGCTTATCAACGAAAAGGATCAG CTCACCTCTTCTGTTCTACCAGCTGCCTCTCCTCCTTCTCGCACAAGCCTGCTCCAAAGA AACTTTGTGTTATGTGTAAAAAAGATATAACTACAATGAAAGGAACCATTGTTGCTCAAG TGGATTCAAGTGAATCCTTCCAGGAATTCTGTAGTACATCTTGTTTGTCTCTCTATGAAG ACAAACAAAATCCGACTAAAGGAGCTCTAAATAAATCAAGATGCACGATTTGTGGCAAAC TAACAGAGATCCGCCATGAAGTTAGCTTTAAAAATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCTCGAGCTCGAGCCGCGATCAAAGAACCATAACATTTGCATCATCTAAAAACGAAG AGCTACAAGGAAATGATTCCAAAATTCTTCCTTCTGCAAAAGAACTGACTTCTCAGAAGG GAAGTGTAAGTGAGACAATTGTCATTGATGATGAAGAGGACATGGAAACCAATCAAGGGC AAGAGAAAAATGCCTCCAGTTTTATTGAACGGAGACCTCCCGAAACGAAAAACAGAACCA GTGATGTGGATTTCTCCACTCCCAGTTTTTCAAGAAGTAAGGTAAATGCAGGCGTGGGTA ATAGTGGTATCACCACCGAACCAGACTCTGAAATTCAGATCGCCGATGTTACAACCTTGG AGACAGGTGTCAGCTCTGTGAGCGACGGCCAGTTGGAAAGTACTGACGGGCAAGACATGA ACTTAATGATCACACACGTAACATCCCTGCAGAATACCAACCTGGGAGAGGTCGCGAACG GACTGCAGTCAAGTAACTTCGGTGTTAACATACAAACGTTCACCCCGTCTTTAACGTCAC AGACCAAGGCTGCAGTAGGACCTTTTAATCCCGGTAGAATGAATGGGGCAGGAGATGTAT TTCAGAACGGAGAGTCTGCAACACATCACAATCCTGATTCTTGGATCTCCCAGTCAGCGT CCTTTCCCCGGAACCAGAAGCAGCCAGGGGTGGATTCTTTATCTCCAGTGGCCTCACTTC CTAAACAGATTTTCCAGCCTTCTGCCCAGCAGCAACCCACTAAACCAGTTAAAGTCACTT GTGCAAACTGCAAAAAACCTTTGCAGAAGGGACAGACAGCTTATCAACGAAAAGGATCAG CTCACCTCTTCTGTTCTACCAGCTGCCTCTCCTCCTTCTCGCACAAGCCTGCTCCAAAGA AACTTTGTGTTATGTGTAAAAAAGATATAACTACAATGAAAGGAACCATTGTTGCTCAAG TGGATTCAAGTGAATCCTTCCAGGAATTCTGTAGTACATCTTGTTTGTCTCTCTATGAAG ACAAACAAAATCCGACTAAAGGAGCTCTAAATAAATCAAGATGCACGATTTGTGGCAAAC TAACAGAGATCCGCCATGAAGTTAGCTTTAAAAATA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 300-419, - strand, RNAz p=0.98661 | |
| 923-1088, - strand, RNAz p=0.998942 | |
| 985-1091, + strand, RNAz p=0.960267 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 300-419, - strand, RNAz p=0.98661 | |
| 923-1088, - strand, RNAz p=0.998942 | |
| 985-1091, + strand, RNAz p=0.960267 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 21-636, gnl|bosTau2|chr12 (20661110-20661725) | |
| 21-636, gnl|Hg17|chr13 (19465444-19466059) | |
| 21-636, gnl|Mm7|chr14 (51770656-51771271) | |
| 906-1091, gnl|bosTau2|chr12 (20582881-20582696) | |
| 906-1091, gnl|canFam2|chr25 (21230702-21230508) | |
| 906-1091, gnl|danRer3|chrUn (117011018-117010823) | |
| 906-1091, gnl|dasNov1|scaffold_21929 (15615-15814) | |
| 906-1091, gnl|echTel1|scaffold_284985 (38839-39038) | |
| 906-1091, gnl|fr1|chrUn (272281553-272281725) | |
| 906-1091, gnl|galGal2|chr1 (171048457-171048655) | |
| 906-1091, gnl|hg17|chr13 (19309782-19309981) | |
| 906-1091, gnl|Hg17|chr13 (19309978-19309793) | |
| 906-1091, gnl|loxAfr1|scaffold_29453 (5974-5778) | |
| 906-1091, gnl|mm7|chr14 (51665374-51665569) | |
| 906-1091, gnl|Mm7|chr14 (51665566-51665384) | |
| 906-1091, gnl|monDom2|scaffold_15 (27630427-27630228) | |
| 906-1091, gnl|oryCun1|scaffold_94918 (10874-11070) | |
| 906-1091, gnl|panTro1|chr14_random (4854557-4854757) | |
| 906-1091, gnl|rheMac2|chr17 (1645168-1644969) | |
| 906-1091, gnl|rn3|chr15 (35812977-35813172) | |
| 906-1091, gnl|tetNig1|chr2 (17727749-17727921) | |
| 906-1091, gnl|xenTro1|scaffold_327 (833607-833409) | |
| 923-1088, gnl|bosTau2|chr12 (20667074-20667239) | |
| 923-1088, gnl|Hg17|chr13 (19477214-19477379) | |
| 923-1088, gnl|Mm7|chr14 (51780671-51780836) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 21-636, gnl|bosTau2|chr12 (20661110-20661725) | |
| 21-636, gnl|Hg17|chr13 (19465444-19466059) | |
| 21-636, gnl|Mm7|chr14 (51770656-51771271) | |
| 906-1091, gnl|bosTau2|chr12 (20582881-20582696) | |
| 906-1091, gnl|canFam2|chr25 (21230702-21230508) | |
| 906-1091, gnl|danRer3|chrUn (117011018-117010823) | |
| 906-1091, gnl|dasNov1|scaffold_21929 (15615-15814) | |
| 906-1091, gnl|echTel1|scaffold_284985 (38839-39038) | |
| 906-1091, gnl|fr1|chrUn (272281553-272281725) | |
| 906-1091, gnl|galGal2|chr1 (171048457-171048655) | |
| 906-1091, gnl|hg17|chr13 (19309782-19309981) | |
| 906-1091, gnl|Hg17|chr13 (19309978-19309793) | |
| 906-1091, gnl|loxAfr1|scaffold_29453 (5974-5778) | |
| 906-1091, gnl|mm7|chr14 (51665374-51665569) | |
| 906-1091, gnl|Mm7|chr14 (51665566-51665384) | |
| 906-1091, gnl|monDom2|scaffold_15 (27630427-27630228) | |
| 906-1091, gnl|oryCun1|scaffold_94918 (10874-11070) | |
| 906-1091, gnl|panTro1|chr14_random (4854557-4854757) | |
| 906-1091, gnl|rheMac2|chr17 (1645168-1644969) | |
| 906-1091, gnl|rn3|chr15 (35812977-35813172) | |
| 906-1091, gnl|tetNig1|chr2 (17727749-17727921) | |
| 906-1091, gnl|xenTro1|scaffold_327 (833607-833409) | |
| 923-1088, gnl|bosTau2|chr12 (20667074-20667239) | |
| 923-1088, gnl|Hg17|chr13 (19477214-19477379) | |
| 923-1088, gnl|Mm7|chr14 (51780671-51780836) |