Non-Coding RNA Search

Ss1.1-Pig4-TMW8050N23.3

Sequence:


               
               CTCGATCGAGAAACCCCTGCAGAGAAAGTAATCCCGATTCGTTTCATGGCCAAGGATGCG
GGTGGAAAAGTTGCTTTCTGCACCATTAACGTCATCCTCACAGACGACAATGATAACGCG
CCGCAGTTTCGAGCAACCAAGTTTGAAGTAAACATTGGCTCCAATGTTCCCAAAGGGACG
TCAGTCATCAAAGTCCTCGCCAGTGACGCTGATGAGGGATCCAATGCCGATGTCACCTAT
GCCATCGAAGCAGATTCCGAAAACGTTAAAGAGAATTTGGAGATTAACAGACTGTCTGGC
ATCATCACTACCAAGGAAAGCTTAGTTGGCTTAGAAAACGAGGTCTTCACTTTCTTTGTC
AGAGCTGTGGATAACGGGTCTCCCCCCAAGGAATCTGTCGTCCCCGTCTATGTTAAAGTA
CTTCCACCGGAAATGCGACTCCCGAGATTTTCAGAACCATTTTACACCTATACAGTTTCG
GAAGACGTGCCTATTGGTACAGAAATAGATCTCATCCGAGCAGAACACAGCGGGACCGTC
CTTTACAGCCTTGTCAAAGGGAATACGCCCGAGAGCAACAGGGATGAGTTCTTTGTGATT
GACAAGCAGAGTGGGAGGCTGAAACTGGAAAAGAGCCTGGACCACGAGGCGACTAAATGG
TACCAGTTTTCTGTACTTGCCAGGTGCTCTCATGATGACTACGAGGTGGTGGCTTCGGTA
GATGTGAGTATCCAAGTGAAAGATGCAAACGATAACAGCCCTGTCTTAGAGTCCAATCCC
TATGAGGCATTTATTGTTGAAAACCTGCCAGCAGGGAGCAGAGTCATCCAGATCAGGGCG
TCTGACCTGGATTCAGGAACTAACGGTCAAGTGATGTATAATCTAGATCAGTCACAAAGT
GTCGAAGTCATTGAATCTTTTGCCATTAACATGGAAACAGGCTGGATCACAACCCTAAAG
GAACTTGACCATGAAAAGAGAGACCGATACCAGATAAAGGTGGTTGCATCAGATCTCGGG
GAAAAGGTTCAGCTCTCCTCCACTGCCATCGTGGATGTCACTGTCACCGATGTCAACGAT
AGCCCACCACGGTTCACGGCAGAGATTTATAAAGGGACTGTGAGTGAAGATGATCCACCA
GGGGGCGTAATTGCCATCCTGAGTACTACAGATGCTGATTCTGAAGAGATTAACAGACAA
GTTACCTATTACATAACAGGAGGAGATCCTTTGGGGCAGTTTGCTGTTGAAAATATACAG
AATGAATGGAAGGTCTATGTCAAGAAACCTCTAGATCGGGAAAAAAGGGACAATTATCTT
CTGACTATCACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGATCGAGAAACCCCTGCAGAGAAAGTAATCCCGATTCGTTTCATGGCCAAGGATGCG
GGTGGAAAAGTTGCTTTCTGCACCATTAACGTCATCCTCACAGACGACAATGATAACGCG
CCGCAGTTTCGAGCAACCAAGTTTGAAGTAAACATTGGCTCCAATGTTCCCAAAGGGACG
TCAGTCATCAAAGTCCTCGCCAGTGACGCTGATGAGGGATCCAATGCCGATGTCACCTAT
GCCATCGAAGCAGATTCCGAAAACGTTAAAGAGAATTTGGAGATTAACAGACTGTCTGGC
ATCATCACTACCAAGGAAAGCTTAGTTGGCTTAGAAAACGAGGTCTTCACTTTCTTTGTC
AGAGCTGTGGATAACGGGTCTCCCCCCAAGGAATCTGTCGTCCCCGTCTATGTTAAAGTA
CTTCCACCGGAAATGCGACTCCCGAGATTTTCAGAACCATTTTACACCTATACAGTTTCG
GAAGACGTGCCTATTGGTACAGAAATAGATCTCATCCGAGCAGAACACAGCGGGACCGTC
CTTTACAGCCTTGTCAAAGGGAATACGCCCGAGAGCAACAGGGATGAGTTCTTTGTGATT
GACAAGCAGAGTGGGAGGCTGAAACTGGAAAAGAGCCTGGACCACGAGGCGACTAAATGG
TACCAGTTTTCTGTACTTGCCAGGTGCTCTCATGATGACTACGAGGTGGTGGCTTCGGTA
GATGTGAGTATCCAAGTGAAAGATGCAAACGATAACAGCCCTGTCTTAGAGTCCAATCCC
TATGAGGCATTTATTGTTGAAAACCTGCCAGCAGGGAGCAGAGTCATCCAGATCAGGGCG
TCTGACCTGGATTCAGGAACTAACGGTCAAGTGATGTATAATCTAGATCAGTCACAAAGT
GTCGAAGTCATTGAATCTTTTGCCATTAACATGGAAACAGGCTGGATCACAACCCTAAAG
GAACTTGACCATGAAAAGAGAGACCGATACCAGATAAAGGTGGTTGCATCAGATCTCGGG
GAAAAGGTTCAGCTCTCCTCCACTGCCATCGTGGATGTCACTGTCACCGATGTCAACGAT
AGCCCACCACGGTTCACGGCAGAGATTTATAAAGGGACTGTGAGTGAAGATGATCCACCA
GGGGGCGTAATTGCCATCCTGAGTACTACAGATGCTGATTCTGAAGAGATTAACAGACAA
GTTACCTATTACATAACAGGAGGAGATCCTTTGGGGCAGTTTGCTGTTGAAAATATACAG
AATGAATGGAAGGTCTATGTCAAGAAACCTCTAGATCGGGAAAAAAGGGACAATTATCTT
CTGACTATCACA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               160-279, - strand, RNAz p=0.734639

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-279, - strand, RNAz p=0.734639

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               171-265, - strand, RNAmicro p=0.980703

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               171-265, - strand, RNAmicro p=0.980703

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-1220, gnl|bosTau2|chr27 (5380957-5382176)
               

               
               1-1220, gnl|canFam2|chr16 (47175094-47174198)
               

               
               1-1220, gnl|danRer3|chr1 (13545153-13544254)
               

               
               1-1220, gnl|dasNov1|scaffold_17014 (3830-2936)
               

               
               1-1220, gnl|echTel1|scaffold_231636 (2634-1731)
               

               
               1-1220, gnl|fr1|chrUn (19111631-19110731)
               

               
               1-1220, gnl|galGal2|chr4 (62219271-62220167)
               

               
               1-1220, gnl|hg17|chr4 (187914008-187914904)
               

               
               1-1220, gnl|Hg17|chr4 (187915229-187914010)
               

               
               1-1220, gnl|loxAfr1|scaffold_520 (104453-105351)
               

               
               1-1220, gnl|mm7|chr8 (43812431-43811535)
               

               
               1-1220, gnl|Mm7|chr8 (43811208-43812427)
               

               
               1-1220, gnl|monDom2|scaffold_9 (69224168-69225064)
               

               
               1-1220, gnl|oryCun1|scaffold_211531 (248118-247222)
               

               
               1-1220, gnl|panTro1|chr3_random (31104131-31105027)
               

               
               1-1220, gnl|rheMac2|chr5 (178728892-178729788)
               

               
               1-1220, gnl|rn3|chr16 (50497067-50497963)
               

               
               1-1220, gnl|tetNig1|chr18 (7869895-7868995)
               

               
               1-1220, gnl|xenTro1|scaffold_656 (422554-423448)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1220, gnl|bosTau2|chr27 (5380957-5382176)
               

               
               1-1220, gnl|canFam2|chr16 (47175094-47174198)
               

               
               1-1220, gnl|danRer3|chr1 (13545153-13544254)
               

               
               1-1220, gnl|dasNov1|scaffold_17014 (3830-2936)
               

               
               1-1220, gnl|echTel1|scaffold_231636 (2634-1731)
               

               
               1-1220, gnl|fr1|chrUn (19111631-19110731)
               

               
               1-1220, gnl|galGal2|chr4 (62219271-62220167)
               

               
               1-1220, gnl|hg17|chr4 (187914008-187914904)
               

               
               1-1220, gnl|Hg17|chr4 (187915229-187914010)
               

               
               1-1220, gnl|loxAfr1|scaffold_520 (104453-105351)
               

               
               1-1220, gnl|mm7|chr8 (43812431-43811535)
               

               
               1-1220, gnl|Mm7|chr8 (43811208-43812427)
               

               
               1-1220, gnl|monDom2|scaffold_9 (69224168-69225064)
               

               
               1-1220, gnl|oryCun1|scaffold_211531 (248118-247222)
               

               
               1-1220, gnl|panTro1|chr3_random (31104131-31105027)
               

               
               1-1220, gnl|rheMac2|chr5 (178728892-178729788)
               

               
               1-1220, gnl|rn3|chr16 (50497067-50497963)
               

               
               1-1220, gnl|tetNig1|chr18 (7869895-7868995)
               

               
               1-1220, gnl|xenTro1|scaffold_656 (422554-423448)

	1-1220, gnl\|bosTau2\|chr27 (5380957-5382176)
	1-1220, gnl\|canFam2\|chr16 (47175094-47174198)
	1-1220, gnl\|danRer3\|chr1 (13545153-13544254)
	1-1220, gnl\|dasNov1\|scaffold_17014 (3830-2936)
	1-1220, gnl\|echTel1\|scaffold_231636 (2634-1731)
	1-1220, gnl\|fr1\|chrUn (19111631-19110731)
	1-1220, gnl\|galGal2\|chr4 (62219271-62220167)
	1-1220, gnl\|hg17\|chr4 (187914008-187914904)
	1-1220, gnl\|Hg17\|chr4 (187915229-187914010)
	1-1220, gnl\|loxAfr1\|scaffold_520 (104453-105351)
	1-1220, gnl\|mm7\|chr8 (43812431-43811535)
	1-1220, gnl\|Mm7\|chr8 (43811208-43812427)
	1-1220, gnl\|monDom2\|scaffold_9 (69224168-69225064)
	1-1220, gnl\|oryCun1\|scaffold_211531 (248118-247222)
	1-1220, gnl\|panTro1\|chr3_random (31104131-31105027)
	1-1220, gnl\|rheMac2\|chr5 (178728892-178729788)
	1-1220, gnl\|rn3\|chr16 (50497067-50497963)
	1-1220, gnl\|tetNig1\|chr18 (7869895-7868995)
	1-1220, gnl\|xenTro1\|scaffold_656 (422554-423448)