Ss1.1-Pig4-TMW8050O05.3
|
GTCAAAGGGACCCGGGGCTAGAAGGAGAACTTTGAAAATGACAGAAAGGGATTTCTTCTC
AGAGTTCCAGGGTAGCAGGAAATAATTGCTGAAGCTCCCATACGGAACAGAATTCCGCAG
AAAAACAGACACCCTAATTCCTTCTAACCTAGAGAGTTTGCTCGAATTTTTACATGTGCT
CAGCACATCTGGAAACATCTTGTGTCAAAACACGTAATGTTTAAAGTAGTAAACTCAGCA
CTGCAAGAAATAATTGGATGAGGCAAAAAGAACTTAATCCAAAATGTTCTTGTAATTTTC
CCCAGGGACGTTTTCTTAGCTTTTTTTAACACTAAAAAATAACTTTTTAGGATTTTTATA
AAACTAACATGTGAGTTGAAAACATTGTGTTAGAAAAAAATTATTTTACGCATAAGTGTG
ACAAATGTAAACATTGTTCAAATTCCCATCACCTTAAGATAGCAATCATAGTACTTTGTT
GCTCATCCTTATGTAATTCATTTTATGGGCACATACACATATGTCTGTATCATTTAACAA
AGATGGACTCATATCATGAGTGCTGTTCATCCTGTATGCTTTTTTAAATTTTTTATTGAA
CTCTAGTTGATTTACAAGGTTGTGTTATGCTTTTTAAAATTGTGATATTTTTCCCCTTCA
TCCCCAACCCCCACTCTTTCCCAAGTAACCAATGTTAAAAACTAGTATATATCTTTCTCC
AGGTTCATATAACTATAGGCAAACAGATATATGCATATATACAGGTATACAGCCACGATC
CAGTAACATCAATTGTCCAAATTATGTCCTTGTCCTTTTTTTTTTTTTTTTAAACAGCAT
ATGGAAGTTCCCAGGCTCTGGCGTAGGCTGGCAGCTACAGCTCCGATTAGACCCCTAGCC
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------AACAATAATAACAATAATAATTTT
AAAATAAATAAATTTTTAAAAAAGGAAAGTGAGACCTCTATAAGCATGTCTACCCAGAAG
GATTTTTTGGGGGGAGGTCAAGGGCCTGACTGTTAATTCAGAAAATCGGCGTGTCTTTGT
TCTTCCACAAACATCTGCCTAACTATACATTAGTGAAACCTGAAGATTATCCCTATTTTG
CATATAACAATATCGGAGATATTGTTAATTATAAATAATCCAATAAAATAAAAAGTGGCA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GTCAAAGGGACCCGGGGCTAGAAGGAGAACTTTGAAAATGACAGAAAGGGATTTCTTCTC
AGAGTTCCAGGGTAGCAGGAAATAATTGCTGAAGCTCCCATACGGAACAGAATTCCGCAG
AAAAACAGACACCCTAATTCCTTCTAACCTAGAGAGTTTGCTCGAATTTTTACATGTGCT
CAGCACATCTGGAAACATCTTGTGTCAAAACACGTAATGTTTAAAGTAGTAAACTCAGCA
CTGCAAGAAATAATTGGATGAGGCAAAAAGAACTTAATCCAAAATGTTCTTGTAATTTTC
CCCAGGGACGTTTTCTTAGCTTTTTTTAACACTAAAAAATAACTTTTTAGGATTTTTATA
AAACTAACATGTGAGTTGAAAACATTGTGTTAGAAAAAAATTATTTTACGCATAAGTGTG
ACAAATGTAAACATTGTTCAAATTCCCATCACCTTAAGATAGCAATCATAGTACTTTGTT
GCTCATCCTTATGTAATTCATTTTATGGGCACATACACATATGTCTGTATCATTTAACAA
AGATGGACTCATATCATGAGTGCTGTTCATCCTGTATGCTTTTTTAAATTTTTTATTGAA
CTCTAGTTGATTTACAAGGTTGTGTTATGCTTTTTAAAATTGTGATATTTTTCCCCTTCA
TCCCCAACCCCCACTCTTTCCCAAGTAACCAATGTTAAAAACTAGTATATATCTTTCTCC
AGGTTCATATAACTATAGGCAAACAGATATATGCATATATACAGGTATACAGCCACGATC
CAGTAACATCAATTGTCCAAATTATGTCCTTGTCCTTTTTTTTTTTTTTTTAAACAGCAT
ATGGAAGTTCCCAGGCTCTGGCGTAGGCTGGCAGCTACAGCTCCGATTAGACCCCTAGCC
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------AACAATAATAACAATAATAATTTT
AAAATAAATAAATTTTTAAAAAAGGAAAGTGAGACCTCTATAAGCATGTCTACCCAGAAG
GATTTTTTGGGGGGAGGTCAAGGGCCTGACTGTTAATTCAGAAAATCGGCGTGTCTTTGT
TCTTCCACAAACATCTGCCTAACTATACATTAGTGAAACCTGAAGATTATCCCTATTTTG
CATATAACAATATCGGAGATATTGTTAATTATAAATAATCCAATAAAATAAAAAGTGGCA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
77-588, gnl|bosTau2|chr9 (62961933-62961416) |
|
77-588, gnl|Hg17|chr6 (157766394-157765032) |
| |
|
625-750, gnl|bosTau2|chr9 (62961430-62961304) |
|
625-750, gnl|canFam2|chr1 (49979872-49979976) |
|
625-750, gnl|canFam2|chr1 (49979872-49979976) |
|
625-750, gnl|hg17|chr6 (157764919-157765041) |
|
625-750, gnl|Hg17|chr6 (157765046-157764919) |
|
625-750, gnl|hg17|chr6_random (1594627-1594749) |
|
625-750, gnl|panTro1|chr5 (161401240-161401343) |
|
625-750, gnl|panTro1|chr5 (161401240-161401343) |
|
625-750, gnl|rheMac2|chr4 (105559778-105559656) |
|
625-750, gnl|rheMac2|chr4 (105559778-105559656) |
| |
|
937-1136, gnl|bosTau2|chr9 (62959675-62959474) |
|
937-1136, gnl|Hg17|chr6 (157763410-157763204) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
77-588, gnl|bosTau2|chr9 (62961933-62961416) |
|
77-588, gnl|Hg17|chr6 (157766394-157765032) |
| |
|
625-750, gnl|bosTau2|chr9 (62961430-62961304) |
|
625-750, gnl|canFam2|chr1 (49979872-49979976) |
|
625-750, gnl|canFam2|chr1 (49979872-49979976) |
|
625-750, gnl|hg17|chr6 (157764919-157765041) |
|
625-750, gnl|Hg17|chr6 (157765046-157764919) |
|
625-750, gnl|hg17|chr6_random (1594627-1594749) |
|
625-750, gnl|panTro1|chr5 (161401240-161401343) |
|
625-750, gnl|panTro1|chr5 (161401240-161401343) |
|
625-750, gnl|rheMac2|chr4 (105559778-105559656) |
|
625-750, gnl|rheMac2|chr4 (105559778-105559656) |
| |
|
937-1136, gnl|bosTau2|chr9 (62959675-62959474) |
|
937-1136, gnl|Hg17|chr6 (157763410-157763204) |
