Ss1.1-Pig4-TMW8050O07.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCAAAACCAAAACCAGACACAGCACAAGCAGCGGCCCCAGGCCACTGCGGAACAAATTC GACTTGCACAGATGATTTCGGACCATAATGATGCTGACTTTGAGGAAAAGGTGAAACAAT TGATTGATATCACAGGCAAGAACCAGGATGAATGTGTCATTGCTTTGCATGACTGCAACG GAGATGTCAACAGAGCCATCAATGTACTGCTGGAAGGAAACCCAGATACGCATTCCTGGG AGATGGTCGGGAAGAAGAAGGGAGTTTCAGGACAGAAGGACGGTGGCCAAACGGAGTCCA ACGAGGAAGGCAAAGAAAATCGAGACCGGGACAGAGACTACAGCCGGCGACGTGGTGGAC CACCAAGACGGGGAAGAGGTGCCAGCCGTGGACGAGAGTTTCGGGGTCAGGAAAATGGAT TAGATGGCACGAAGAGTGGAGGACCTGCTGGAAGAGGCACAGAAAGAGGCAGAAGAGGTC GTGGCCGAGGCAGAGGTGGCTCTGGTAGGCGGGGAGGAAGGTTTTCTGCTCAAGGAATGG GAACCTTTAACCCAGCTGATTATGCAGAGCCGGCCAATACTGACGATAACTATGGCAATA ATAGCGGCAATACATGGAACAACACTGGCCACTTTGAACCTGATGATGGGACAAGTGCAT GGAGGACTGCAACAGAGGAGTGGGGAACTGAAGATTGGAATGAAGATCTTTCTGAGACCA AGATCTTCACTGCCTCTAATGTGTCTTCAGTACCTCTGCCTGCGGAGAATGTGACAATCA CTGCTGGTCAGAGAATTGATCTTGCTGTTCTGTTGGGGAAGACACCATCTTCAATGGAGA ATGATTCATCTAATCTGGATCCATCTCAGGCTCCTTCTCTTGCCCAGCCGCTGGTGTTTA GTAACTCGAAGCAGAGTGCTATATCACAGCCTGCTTCAGGGAACACATTTTCTCATCACA ATATGGTGAGCATGTTAGGGAAAGGATTTGGTGATGTCACTGAAGCTAAAGGCGGCAGCA CCACAGGCTCCCAGTTCTTGGAGCAGTTCAAGACTGCTCAAGCCCTGGCTCAGTTGGCAG CTCAGCATTCTCAATCTGGAACCACCACCACCTCCTCTTGGGACATGGGATCCACCACAC AGTCCCCGTCGCTGGTGCAGTATGATTTGAAGACCCCAAATGATTCAACAGTGCACAGCC CCTTTACAAAGCGCCAGGCTTTCACTTCATCTTCAACTATGATGGAGGTGTTCCTGCAGG AGAAGCCACCTGCAGTGGCTACCTCCACAGCTGCACCTCCACCGCCCTCTTCTCCTCTGC CAAGCAAGTCCACCTCGGCTCCACAAATGTCTCCTGGGTCTTCAGACAACCAGTCCTCCA GCCCTCAGCCGGCTCAGCAAAAACTGAAACAGCAGAAGAAAAAAGCCTCCTTGACGTCTA AGATTCCTGCTCTGGCTGTGGAGATGCCTGGCTCAGCAGATATCTCAGGGCTAAACCTGC AGTTTGGAGCATTGCAGTTTGGGTCAGAGCCTGTCCTTTCTGATTATGAGTCCACCCCCA CCACGAGCGCCTCTTCAAGCCAGGCTCCAAGTAGCCTCTATACCAGCACGGCCAGTGAAT CTTCATCTACAATTTCATCTAACCAGAGTCAGGAGTCTGGTTATCAGAGTGGCCCAATTC AGTCGACAACCTATACCTCCCAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCAAAACCAAAACCAGACACAGCACAAGCAGCGGCCCCAGGCCACTGCGGAACAAATTC GACTTGCACAGATGATTTCGGACCATAATGATGCTGACTTTGAGGAAAAGGTGAAACAAT TGATTGATATCACAGGCAAGAACCAGGATGAATGTGTCATTGCTTTGCATGACTGCAACG GAGATGTCAACAGAGCCATCAATGTACTGCTGGAAGGAAACCCAGATACGCATTCCTGGG AGATGGTCGGGAAGAAGAAGGGAGTTTCAGGACAGAAGGACGGTGGCCAAACGGAGTCCA ACGAGGAAGGCAAAGAAAATCGAGACCGGGACAGAGACTACAGCCGGCGACGTGGTGGAC CACCAAGACGGGGAAGAGGTGCCAGCCGTGGACGAGAGTTTCGGGGTCAGGAAAATGGAT TAGATGGCACGAAGAGTGGAGGACCTGCTGGAAGAGGCACAGAAAGAGGCAGAAGAGGTC GTGGCCGAGGCAGAGGTGGCTCTGGTAGGCGGGGAGGAAGGTTTTCTGCTCAAGGAATGG GAACCTTTAACCCAGCTGATTATGCAGAGCCGGCCAATACTGACGATAACTATGGCAATA ATAGCGGCAATACATGGAACAACACTGGCCACTTTGAACCTGATGATGGGACAAGTGCAT GGAGGACTGCAACAGAGGAGTGGGGAACTGAAGATTGGAATGAAGATCTTTCTGAGACCA AGATCTTCACTGCCTCTAATGTGTCTTCAGTACCTCTGCCTGCGGAGAATGTGACAATCA CTGCTGGTCAGAGAATTGATCTTGCTGTTCTGTTGGGGAAGACACCATCTTCAATGGAGA ATGATTCATCTAATCTGGATCCATCTCAGGCTCCTTCTCTTGCCCAGCCGCTGGTGTTTA GTAACTCGAAGCAGAGTGCTATATCACAGCCTGCTTCAGGGAACACATTTTCTCATCACA ATATGGTGAGCATGTTAGGGAAAGGATTTGGTGATGTCACTGAAGCTAAAGGCGGCAGCA CCACAGGCTCCCAGTTCTTGGAGCAGTTCAAGACTGCTCAAGCCCTGGCTCAGTTGGCAG CTCAGCATTCTCAATCTGGAACCACCACCACCTCCTCTTGGGACATGGGATCCACCACAC AGTCCCCGTCGCTGGTGCAGTATGATTTGAAGACCCCAAATGATTCAACAGTGCACAGCC CCTTTACAAAGCGCCAGGCTTTCACTTCATCTTCAACTATGATGGAGGTGTTCCTGCAGG AGAAGCCACCTGCAGTGGCTACCTCCACAGCTGCACCTCCACCGCCCTCTTCTCCTCTGC CAAGCAAGTCCACCTCGGCTCCACAAATGTCTCCTGGGTCTTCAGACAACCAGTCCTCCA GCCCTCAGCCGGCTCAGCAAAAACTGAAACAGCAGAAGAAAAAAGCCTCCTTGACGTCTA AGATTCCTGCTCTGGCTGTGGAGATGCCTGGCTCAGCAGATATCTCAGGGCTAAACCTGC AGTTTGGAGCATTGCAGTTTGGGTCAGAGCCTGTCCTTTCTGATTATGAGTCCACCCCCA CCACGAGCGCCTCTTCAAGCCAGGCTCCAAGTAGCCTCTATACCAGCACGGCCAGTGAAT CTTCATCTACAATTTCATCTAACCAGAGTCAGGAGTCTGGTTATCAGAGTGGCCCAATTC AGTCGACAACCTATACCTCCCAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 831-1362, + strand, RNAz p=0.986573 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 831-1362, + strand, RNAz p=0.986573 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 230-399, gnl|bosTau2|chr3 (8329894-8330063) | |
| 230-399, gnl|Hg17|chr1 (151020139-151020308) | |
| 230-399, gnl|Mm7|chr3 (90169676-90169507) | |
| 541-657, gnl|bosTau2|chr3 (8332444-8332560) | |
| 541-657, gnl|canFam2|chr7 (45977660-45977539) | |
| 541-657, gnl|danRer3|chr19 (2467753-2467868) | |
| 541-657, gnl|dasNov1|scaffold_75505 (2607-2720) | |
| 541-657, gnl|echTel1|scaffold_319936 (91213-91092) | |
| 541-657, gnl|fr1|chrUn (156473061-156472946) | |
| 541-657, gnl|galGal2|chrUn (132671036-132671157) | |
| 541-657, gnl|hg17|chr1 (151022573-151022694) | |
| 541-657, gnl|Hg17|chr1 (151022572-151022688) | |
| 541-657, gnl|loxAfr1|scaffold_31980 (348-227) | |
| 541-657, gnl|mm7|chr3 (90164838-90164717) | |
| 541-657, gnl|Mm7|chr3 (90164837-90164721) | |
| 541-657, gnl|monDom2|scaffold_59 (3846262-3846141) | |
| 541-657, gnl|oryCun1|scaffold_185094 (13682-13803) | |
| 541-657, gnl|panTro1|chr1 (133004920-133005041) | |
| 541-657, gnl|rheMac2|chr1 (132763718-132763839) | |
| 541-657, gnl|rn3|chr2 (182206813-182206692) | |
| 541-657, gnl|tetNig1|chr21_random (2401242-2401354) | |
| 541-657, gnl|xenTro1|scaffold_918 (272944-273059) | |
| 792-970, gnl|bosTau2|chr3 (8341331-8341509) | |
| 792-970, gnl|Hg17|chr1 (151031751-151031929) | |
| 792-970, gnl|Mm7|chr3 (90155894-90155716) | |
| 1164-1442, gnl|bosTau2|chr3 (8345437-8345715) | |
| 1164-1442, gnl|canFam2|chr7 (45964116-45963833) | |
| 1164-1442, gnl|danRer3|chr19 (2473456-2473680) | |
| 1164-1442, gnl|dasNov1|scaffold_75505 (3230-3504) | |
| 1164-1442, gnl|echTel1|scaffold_322681 (11552-11269) | |
| 1164-1442, gnl|fr1|chrUn (156471170-156470837) | |
| 1164-1442, gnl|galGal2|chrUn (132677403-132677686) | |
| 1164-1442, gnl|hg17|chr1 (151036590-151036873) | |
| 1164-1442, gnl|Hg17|chr1 (151036589-151036867) | |
| 1164-1442, gnl|loxAfr1|scaffold_1889 (52210-51927) | |
| 1164-1442, gnl|mm7|chr3 (90152176-90151893) | |
| 1164-1442, gnl|Mm7|chr3 (90152175-90151897) | |
| 1164-1442, gnl|monDom2|scaffold_59 (3835173-3834890) | |
| 1164-1442, gnl|panTro1|chr1 (133018968-133019251) | |
| 1164-1442, gnl|rheMac2|chr1 (132778218-132778501) | |
| 1164-1442, gnl|rn3|chr2 (182189956-182189673) | |
| 1164-1442, gnl|tetNig1|chr21_random (2402923-2403261) | |
| 1164-1442, gnl|xenTro1|scaffold_2203 (12890-12622) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 230-399, gnl|bosTau2|chr3 (8329894-8330063) | |
| 230-399, gnl|Hg17|chr1 (151020139-151020308) | |
| 230-399, gnl|Mm7|chr3 (90169676-90169507) | |
| 541-657, gnl|bosTau2|chr3 (8332444-8332560) | |
| 541-657, gnl|canFam2|chr7 (45977660-45977539) | |
| 541-657, gnl|danRer3|chr19 (2467753-2467868) | |
| 541-657, gnl|dasNov1|scaffold_75505 (2607-2720) | |
| 541-657, gnl|echTel1|scaffold_319936 (91213-91092) | |
| 541-657, gnl|fr1|chrUn (156473061-156472946) | |
| 541-657, gnl|galGal2|chrUn (132671036-132671157) | |
| 541-657, gnl|hg17|chr1 (151022573-151022694) | |
| 541-657, gnl|Hg17|chr1 (151022572-151022688) | |
| 541-657, gnl|loxAfr1|scaffold_31980 (348-227) | |
| 541-657, gnl|mm7|chr3 (90164838-90164717) | |
| 541-657, gnl|Mm7|chr3 (90164837-90164721) | |
| 541-657, gnl|monDom2|scaffold_59 (3846262-3846141) | |
| 541-657, gnl|oryCun1|scaffold_185094 (13682-13803) | |
| 541-657, gnl|panTro1|chr1 (133004920-133005041) | |
| 541-657, gnl|rheMac2|chr1 (132763718-132763839) | |
| 541-657, gnl|rn3|chr2 (182206813-182206692) | |
| 541-657, gnl|tetNig1|chr21_random (2401242-2401354) | |
| 541-657, gnl|xenTro1|scaffold_918 (272944-273059) | |
| 792-970, gnl|bosTau2|chr3 (8341331-8341509) | |
| 792-970, gnl|Hg17|chr1 (151031751-151031929) | |
| 792-970, gnl|Mm7|chr3 (90155894-90155716) | |
| 1164-1442, gnl|bosTau2|chr3 (8345437-8345715) | |
| 1164-1442, gnl|canFam2|chr7 (45964116-45963833) | |
| 1164-1442, gnl|danRer3|chr19 (2473456-2473680) | |
| 1164-1442, gnl|dasNov1|scaffold_75505 (3230-3504) | |
| 1164-1442, gnl|echTel1|scaffold_322681 (11552-11269) | |
| 1164-1442, gnl|fr1|chrUn (156471170-156470837) | |
| 1164-1442, gnl|galGal2|chrUn (132677403-132677686) | |
| 1164-1442, gnl|hg17|chr1 (151036590-151036873) | |
| 1164-1442, gnl|Hg17|chr1 (151036589-151036867) | |
| 1164-1442, gnl|loxAfr1|scaffold_1889 (52210-51927) | |
| 1164-1442, gnl|mm7|chr3 (90152176-90151893) | |
| 1164-1442, gnl|Mm7|chr3 (90152175-90151897) | |
| 1164-1442, gnl|monDom2|scaffold_59 (3835173-3834890) | |
| 1164-1442, gnl|panTro1|chr1 (133018968-133019251) | |
| 1164-1442, gnl|rheMac2|chr1 (132778218-132778501) | |
| 1164-1442, gnl|rn3|chr2 (182189956-182189673) | |
| 1164-1442, gnl|tetNig1|chr21_random (2402923-2403261) | |
| 1164-1442, gnl|xenTro1|scaffold_2203 (12890-12622) |