Non-Coding RNA Search

Ss1.1-Pig4-TMW8050O12.3

Sequence:


               
               TTTTGAGAGAAAACATTTGCCAACCACTGCGCCATGGCGGGAACTCCAAAGCATGGAAAT
TTTACTAGAAGTCCTGAATGTTAAGCACATAGATAGTCCGTCCAGCTCTAGAAGATAGGT
ACTTCACTGAGGAGGGAAGCACACTTTATGCCTAACGTAAGACTTCTTTTGCGTGAACTT
TATCATGAGAAGTAAGAGCAATTCTGTGATAAAATGGTAGGATCAGTAACACCTCAGTTA
ATCTGGCATCTTTAGGTTAAGCCAGAAGCAAGATCTCACTCTAGGCATAGATTTGACCTC
TTGGTGCCAGAATTGGCTTTAGTGGCAGTATCCTTAAAAGCCCACAAGATGGAGATGTTC
CCGCTTGAAGTTCTTTCCGGAGCTGGACCTGAGCACCACATCCCATGGCCACCCTTAGCC
CTTCCACTGCAGTGATAAAGGTAGAAGTCGTTGACCAAGTGTGATTGTATTCTCGTGAAA
TTCTCACATAGCAAATTCTGACAGTTTACCCTTAAAATAACAATCTCCAGTCCTGTCTCT
TTAAACGGTAAGAGGTACCTGTCAACTCTTTTGTGGGGGTGGGTAAAGGGGCAGATGTAA
AAGGGAGTCACACAGCTGCCAGATTTGAGCTTTATGGCCTTTTGCTGTTGCTTACCACCT
ATCGCTCAGCATTTTAAAGGTTCAAATATTTTATGCTGGTTAACTGAGGTTCTACTGTAA
ATAAGTCATCTAGGTTAATTAGTGGATTTTGCTTCAATGGATAATTCTTTTGTTCATTAA
ATTGCTTATGTGATTACTTTTGTCTTTACTAAGAATTCTTAGCACATACAATGGAAAATT
CCGAGTCTCACAATTAAGTTGTAAACCACGTTTTCCCGATGTGCTAAGAGTTTTGTTAGT
GGGAGAACTGTTTAAAAAAGGAGCTTCAGCATAGACACATGCAGGTTGCTGTGCTTAATG
GAGACTGCATAGCCTTTTTATAAGTTTAATGAAGATCTGGAAGAAAAGTCTGAAGCTGAA
ATTCTGTATTTTGTTGTTAACAGTATTTAACTTGCTTTAATTTAAGAAAGACTTAAATAT
ACACTGTTTTTATTGGGGGAAAAATTTATCTTGCTGGCAAGTCAAAGGACTTAATCTGCC
ACTTGCTCACTATTTTGTAAATATGCAGGTGCAGTGGTGATGAACTTTCCAAAACTGGAA
TAGGGTGTTCTTGATATGTGGTCATGTAGGAAGAATGACATTTTAATACACTGCCCAGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTGAGAGAAAACATTTGCCAACCACTGCGCCATGGCGGGAACTCCAAAGCATGGAAAT
TTTACTAGAAGTCCTGAATGTTAAGCACATAGATAGTCCGTCCAGCTCTAGAAGATAGGT
ACTTCACTGAGGAGGGAAGCACACTTTATGCCTAACGTAAGACTTCTTTTGCGTGAACTT
TATCATGAGAAGTAAGAGCAATTCTGTGATAAAATGGTAGGATCAGTAACACCTCAGTTA
ATCTGGCATCTTTAGGTTAAGCCAGAAGCAAGATCTCACTCTAGGCATAGATTTGACCTC
TTGGTGCCAGAATTGGCTTTAGTGGCAGTATCCTTAAAAGCCCACAAGATGGAGATGTTC
CCGCTTGAAGTTCTTTCCGGAGCTGGACCTGAGCACCACATCCCATGGCCACCCTTAGCC
CTTCCACTGCAGTGATAAAGGTAGAAGTCGTTGACCAAGTGTGATTGTATTCTCGTGAAA
TTCTCACATAGCAAATTCTGACAGTTTACCCTTAAAATAACAATCTCCAGTCCTGTCTCT
TTAAACGGTAAGAGGTACCTGTCAACTCTTTTGTGGGGGTGGGTAAAGGGGCAGATGTAA
AAGGGAGTCACACAGCTGCCAGATTTGAGCTTTATGGCCTTTTGCTGTTGCTTACCACCT
ATCGCTCAGCATTTTAAAGGTTCAAATATTTTATGCTGGTTAACTGAGGTTCTACTGTAA
ATAAGTCATCTAGGTTAATTAGTGGATTTTGCTTCAATGGATAATTCTTTTGTTCATTAA
ATTGCTTATGTGATTACTTTTGTCTTTACTAAGAATTCTTAGCACATACAATGGAAAATT
CCGAGTCTCACAATTAAGTTGTAAACCACGTTTTCCCGATGTGCTAAGAGTTTTGTTAGT
GGGAGAACTGTTTAAAAAAGGAGCTTCAGCATAGACACATGCAGGTTGCTGTGCTTAATG
GAGACTGCATAGCCTTTTTATAAGTTTAATGAAGATCTGGAAGAAAAGTCTGAAGCTGAA
ATTCTGTATTTTGTTGTTAACAGTATTTAACTTGCTTTAATTTAAGAAAGACTTAAATAT
ACACTGTTTTTATTGGGGGAAAAATTTATCTTGCTGGCAAGTCAAAGGACTTAATCTGCC
ACTTGCTCACTATTTTGTAAATATGCAGGTGCAGTGGTGATGAACTTTCCAAAACTGGAA
TAGGGTGTTCTTGATATGTGGTCATGTAGGAAGAATGACATTTTAATACACTGCCCAGTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               806-915, + strand, RNAz p=1

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               806-915, + strand, RNAz p=1

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               807-914, + strand, RNAmicro p=0.999914

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               807-914, + strand, RNAmicro p=0.999914

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               54-648, gnl|bosTau2|chr6 (54104820-54105428)
               

               
               54-648, gnl|Hg17|chr4 (83639373-83638746)
               

               
               54-648, gnl|Mm7|chr5 (99183350-99182786)
               


               
               651-1260, gnl|bosTau2|chr6 (54105507-54106107)
               

               
               651-1260, gnl|Hg17|chr4 (83638666-83638066)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               54-648, gnl|bosTau2|chr6 (54104820-54105428)
               

               
               54-648, gnl|Hg17|chr4 (83639373-83638746)
               

               
               54-648, gnl|Mm7|chr5 (99183350-99182786)
               


               
               651-1260, gnl|bosTau2|chr6 (54105507-54106107)
               

               
               651-1260, gnl|Hg17|chr4 (83638666-83638066)

	54-648, gnl\|bosTau2\|chr6 (54104820-54105428)
	54-648, gnl\|Hg17\|chr4 (83639373-83638746)
	54-648, gnl\|Mm7\|chr5 (99183350-99182786)

	651-1260, gnl\|bosTau2\|chr6 (54105507-54106107)
	651-1260, gnl\|Hg17\|chr4 (83638666-83638066)