Non-Coding RNA Search

Ss1.1-Pig4-TMW8050O19.3

Sequence:


               
               GGCCGTGCACAATTATTGTCTTCAAGCAAATTTTTAAAAATGAAGGAAAACAATTAACTT
AATTGAGAAGATTTACATAAATGTTCTTCTTTCTGCAGGAGAAAATAAATTAAAAATCAT
CAGTATGTTTCACTGGTATGCACCATCAAAAAAAATCAAAACACTAGTTTTTAGTAAATT
TATAGAGAAAATTAATAAAGGTAGCATGATGTTTTTCTGGACATGTTATTCAAGCAAAAA
ACCTTGAAATTTTGTGGCAAACTTTTATGGAAAAGAAATACAACAGGACCTTCTTCAATG
CATTTGGGTCTATGAGCTAATCAAAGTGAATTTTGAATTGGAGGATTCAAGTTGAGAAAG
AGAGGTTATATAATTTAGTTTTAATATTTTTACCTTTGTATCCATCCATATACTACTACC
TCACTCTCTTAGTTACTATAACTTTAGAATAAATCTTGATCTCAGACAATATAAGTTCTC
CAACTTTGTTCTTTTTAAAAATTATTTGGACTATTCTTTATTCTTTCTATTTCCATGTAA
AATTACAAAATTAGTTTATGAATTTATATCAATAAAATCTTGTAGGATTTAGATTTTAAA
AATCAAATCAGAGAGAAATGACATCTAGGAATATTGTCTTCCAATAAATGAACATGTCAT
ATTTCTTTCTTTATCTGGATCTTCTTTAATTCTCTCAGCAATGTTTTATGGTTCTTGTTA
TAAAGATTTGCACATATTTTGGGTCATAGACTTAAATGGCAAAGCTAAATTATAAACATT
TACATGAAAATATAGAAAATCCTTATGATGTTGGGGAAAGCAAAGCTTTCTTAGAGAAGA
TACAAAACAAATAAACCACATAAGCCAAAAAAAGAAAAAAAATGATAAATTGGATTTTAT
AAAAATTTTAAAACTTTGGCTGTTTGAAAAAACCCTTTTTAAAAATGAAATGAAGTTCCA
GCCCTAGTTGGCAGTGTAGGAAGACCCTGAACTCACCTTCTCCCCTTAGACACACCAAAT
CTACATCTGCATATAGAGCTATTCCTCCTAAGAAGAACTGAGAGCTAACTGAGCTTCTGC
ACAACAAATAGTAGAGGGACCACATATATACAGGAGAGATGGAAATGCAGTATTGACGAA
AACCCCACCCCCAAGGGGGCAACCTTCAGCAAGAAGGGATATCACTAGGCACCTTGCACA
TACTTGCTGACTCTGAAGCACGTGATAAAAGAGCAGTTTAAAAGGCACCTAGAGCATACT
TTCAAGAAATCCATTTATTAACACTAGAGCATCTGCCAAGTGGTCAGAGAACTGTTGAAA
CTCTCTCTGGAGTCAGAGGTGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCGTGCACAATTATTGTCTTCAAGCAAATTTTTAAAAATGAAGGAAAACAATTAACTT
AATTGAGAAGATTTACATAAATGTTCTTCTTTCTGCAGGAGAAAATAAATTAAAAATCAT
CAGTATGTTTCACTGGTATGCACCATCAAAAAAAATCAAAACACTAGTTTTTAGTAAATT
TATAGAGAAAATTAATAAAGGTAGCATGATGTTTTTCTGGACATGTTATTCAAGCAAAAA
ACCTTGAAATTTTGTGGCAAACTTTTATGGAAAAGAAATACAACAGGACCTTCTTCAATG
CATTTGGGTCTATGAGCTAATCAAAGTGAATTTTGAATTGGAGGATTCAAGTTGAGAAAG
AGAGGTTATATAATTTAGTTTTAATATTTTTACCTTTGTATCCATCCATATACTACTACC
TCACTCTCTTAGTTACTATAACTTTAGAATAAATCTTGATCTCAGACAATATAAGTTCTC
CAACTTTGTTCTTTTTAAAAATTATTTGGACTATTCTTTATTCTTTCTATTTCCATGTAA
AATTACAAAATTAGTTTATGAATTTATATCAATAAAATCTTGTAGGATTTAGATTTTAAA
AATCAAATCAGAGAGAAATGACATCTAGGAATATTGTCTTCCAATAAATGAACATGTCAT
ATTTCTTTCTTTATCTGGATCTTCTTTAATTCTCTCAGCAATGTTTTATGGTTCTTGTTA
TAAAGATTTGCACATATTTTGGGTCATAGACTTAAATGGCAAAGCTAAATTATAAACATT
TACATGAAAATATAGAAAATCCTTATGATGTTGGGGAAAGCAAAGCTTTCTTAGAGAAGA
TACAAAACAAATAAACCACATAAGCCAAAAAAAGAAAAAAAATGATAAATTGGATTTTAT
AAAAATTTTAAAACTTTGGCTGTTTGAAAAAACCCTTTTTAAAAATGAAATGAAGTTCCA
GCCCTAGTTGGCAGTGTAGGAAGACCCTGAACTCACCTTCTCCCCTTAGACACACCAAAT
CTACATCTGCATATAGAGCTATTCCTCCTAAGAAGAACTGAGAGCTAACTGAGCTTCTGC
ACAACAAATAGTAGAGGGACCACATATATACAGGAGAGATGGAAATGCAGTATTGACGAA
AACCCCACCCCCAAGGGGGCAACCTTCAGCAAGAAGGGATATCACTAGGCACCTTGCACA
TACTTGCTGACTCTGAAGCACGTGATAAAAGAGCAGTTTAAAAGGCACCTAGAGCATACT
TTCAAGAAATCCATTTATTAACACTAGAGCATCTGCCAAGTGGTCAGAGAACTGTTGAAA
CTCTCTCTGGAGTCAGAGGTGCCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               576-690, - strand, RNAz p=0.982269

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               576-690, - strand, RNAz p=0.982269

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               182-1004, gnl|bosTau2|chr1 (48826079-48826883)
               

               
               182-1004, gnl|Hg17|chr3 (189941592-189942347)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               182-1004, gnl|bosTau2|chr1 (48826079-48826883)
               

               
               182-1004, gnl|Hg17|chr3 (189941592-189942347)

	182-1004, gnl\|bosTau2\|chr1 (48826079-48826883)
	182-1004, gnl\|Hg17\|chr3 (189941592-189942347)