Non-Coding RNA Search

Ss1.1-Pig4-TMW8050P08.5

Sequence:


               
               ACTCCGCTGCGGGCTGTCCACGGAGCAGCTGGGAGGTTCGAGCGCTGTGCTGGGGGTGGG
CCGGCGGGCCCGGGAGGCGGGAGCTGCGGGCGTGGGCACCGCGCACGCGTAGGGAGCGGC
TCCCGGATGCAGCGCGCCCGCATGAGGGTGGCCTCGCGCCGCTCCGCGGCAGGTGTGCTG
GGGCATCTCTGCCAAGTGACCGAAGAGGCCGGGGCGCTGGGCAGGGAACTGGGGTCAGCA
GGCCACACCTCCTTCAGGCTAGAGCCCCGGAGGGCAGGGTCAAAAAGACGTGACCCTCGG
GGGTCTTGAGACGCCCCAGAGGGTTGTTGGGCGCTCCGAAATTAGGGGAAATTTGGGGAA
ACACCCACCTTCTTATTACTATGGCAATAAGAAGGAGTCTGGCGCCCCTGGGAGCCGAGA
TCCTAAGGGAGATGGAGGGGTTCGGGACTCCTGCAGGGAGCCCAGAACTGTGCTTGAAAC
GATGGAGGCGGGGCAAATGAGTTCAGAGGTCCTTGGGTTCGGGTCCTTGCTCCCACCCAA
GTTGCCGTGAGCTCTCCCGCAAGGCTCTGCCTCTTTCTGGGCTCCCAGTTCCTCGTTCAC
GTCCCCGGGACTCGAGGGGCCTTCCGTGGTCCAAGGTCTCACCCCTGTGGTCTGCCGTAG
GATGGGCCTCTCTGCCGCGGCTCCGCTGTGGGGCCCCCTGGGGCTGCTTCTGGCCATCGC
CCTGCACCCGGCTCTCTCTGTGTCCCCGGCCTCGGAGCCTGCGCACCGGGACTACTGCGT
CCTGGGTGCCGGGCCCGCGGGCCTGCAGATGGCCTACTTCCTGCAACGGGCTGGGAGAGA
CTACACTGTATTCGAACGGGCCGCCAGGCCGGGCAGCTTCTTCACGCGGTACCCCCGGCA
CCGCAAGCTCATCAGCATCAACAAGAGGTACACCGGCAAGGCCAACGCCGAGTTCAACCT
CCGCCACGACTGGAACTCTCTGCTCAGCCATGACCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTCCGCTGCGGGCTGTCCACGGAGCAGCTGGGAGGTTCGAGCGCTGTGCTGGGGGTGGG
CCGGCGGGCCCGGGAGGCGGGAGCTGCGGGCGTGGGCACCGCGCACGCGTAGGGAGCGGC
TCCCGGATGCAGCGCGCCCGCATGAGGGTGGCCTCGCGCCGCTCCGCGGCAGGTGTGCTG
GGGCATCTCTGCCAAGTGACCGAAGAGGCCGGGGCGCTGGGCAGGGAACTGGGGTCAGCA
GGCCACACCTCCTTCAGGCTAGAGCCCCGGAGGGCAGGGTCAAAAAGACGTGACCCTCGG
GGGTCTTGAGACGCCCCAGAGGGTTGTTGGGCGCTCCGAAATTAGGGGAAATTTGGGGAA
ACACCCACCTTCTTATTACTATGGCAATAAGAAGGAGTCTGGCGCCCCTGGGAGCCGAGA
TCCTAAGGGAGATGGAGGGGTTCGGGACTCCTGCAGGGAGCCCAGAACTGTGCTTGAAAC
GATGGAGGCGGGGCAAATGAGTTCAGAGGTCCTTGGGTTCGGGTCCTTGCTCCCACCCAA
GTTGCCGTGAGCTCTCCCGCAAGGCTCTGCCTCTTTCTGGGCTCCCAGTTCCTCGTTCAC
GTCCCCGGGACTCGAGGGGCCTTCCGTGGTCCAAGGTCTCACCCCTGTGGTCTGCCGTAG
GATGGGCCTCTCTGCCGCGGCTCCGCTGTGGGGCCCCCTGGGGCTGCTTCTGGCCATCGC
CCTGCACCCGGCTCTCTCTGTGTCCCCGGCCTCGGAGCCTGCGCACCGGGACTACTGCGT
CCTGGGTGCCGGGCCCGCGGGCCTGCAGATGGCCTACTTCCTGCAACGGGCTGGGAGAGA
CTACACTGTATTCGAACGGGCCGCCAGGCCGGGCAGCTTCTTCACGCGGTACCCCCGGCA
CCGCAAGCTCATCAGCATCAACAAGAGGTACACCGGCAAGGCCAACGCCGAGTTCAACCT
CCGCCACGACTGGAACTCTCTGCTCAGCCATGACCC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               268-485, - strand, RNAz p=0.921438
               

               
               724-837, - strand, RNAz p=0.515595
               

               
               878-996, - strand, RNAz p=0.668204

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               268-485, - strand, RNAz p=0.921438
               

               
               724-837, - strand, RNAz p=0.515595
               

               
               878-996, - strand, RNAz p=0.668204

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-996, gnl|bosTau2|chr5 (45503108-45504115)
               

               
               1-996, gnl|Hg17|chr22 (35227590-35226650)
               

               
               1-996, gnl|Mm7|chr15 (78039643-78038748)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-996, gnl|bosTau2|chr5 (45503108-45504115)
               

               
               1-996, gnl|Hg17|chr22 (35227590-35226650)
               

               
               1-996, gnl|Mm7|chr15 (78039643-78038748)

	268-485, - strand, RNAz p=0.921438
	724-837, - strand, RNAz p=0.515595
	878-996, - strand, RNAz p=0.668204

	1-996, gnl\|bosTau2\|chr5 (45503108-45504115)
	1-996, gnl\|Hg17\|chr22 (35227590-35226650)
	1-996, gnl\|Mm7\|chr15 (78039643-78038748)