Non-Coding RNA Search

Ss1.1-Pig4-TMW8051A10.5

Sequence:


               
               GCCACAGCTTAGAGGTCAAAGATGGAGAACCCAGTGAATCTAGAGAATCCAGCAGATTTC
AGGAGGAAGGTGAAGGGCAGATCTGGGGGCTGGCAGAAAAAGAGACAGCTGTAGAGGTCA
AAGCAGTGAGCAGCTTGCAGCGGGAAGCACAGCAAGAAGAGGGGGATCTGGACGTGAAAG
AAATCCAGGATGCCCAGGAGCTTTTGGAAAAAGAATCTCTGAAGTCTCCGGAAGAGGAGA
TTCAAGAGCCACTGGTGTCTCTGGAAAAACAGAGCCATGAGACAATGAGATCCCTAGAGC
AGGAGAATCCAGAATCTCTGAGGTCTCTGGAAGAAGAGAATTTAGAAACACTAAAACCTC
TAGAAGAGGGGAATCAAGAGTTATTGGCATCTTTAGAAGAAAAAGAGATGGAGGTAGTGA
GATCACTAGAAAAAGAGACTCTAGAACTACTTAAGCCTGTAGAAAAAGAGGACCTGCAGA
CATTGCAATCTCTGGAAAAGGAAAATCAAGAAACACTGAGGTCTTTTGAAGGTAATGAAG
AGACATTTTTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCACAGCTTAGAGGTCAAAGATGGAGAACCCAGTGAATCTAGAGAATCCAGCAGATTTC
AGGAGGAAGGTGAAGGGCAGATCTGGGGGCTGGCAGAAAAAGAGACAGCTGTAGAGGTCA
AAGCAGTGAGCAGCTTGCAGCGGGAAGCACAGCAAGAAGAGGGGGATCTGGACGTGAAAG
AAATCCAGGATGCCCAGGAGCTTTTGGAAAAAGAATCTCTGAAGTCTCCGGAAGAGGAGA
TTCAAGAGCCACTGGTGTCTCTGGAAAAACAGAGCCATGAGACAATGAGATCCCTAGAGC
AGGAGAATCCAGAATCTCTGAGGTCTCTGGAAGAAGAGAATTTAGAAACACTAAAACCTC
TAGAAGAGGGGAATCAAGAGTTATTGGCATCTTTAGAAGAAAAAGAGATGGAGGTAGTGA
GATCACTAGAAAAAGAGACTCTAGAACTACTTAAGCCTGTAGAAAAAGAGGACCTGCAGA
CATTGCAATCTCTGGAAAAGGAAAATCAAGAAACACTGAGGTCTTTTGAAGGTAATGAAG
AGACATTTTTAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               164-403, - strand, RNAz p=0.998674

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               164-403, - strand, RNAz p=0.998674

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               167-332, AV596957 Bos taurus cartilage fetus Bos taurus cDNA clone 
(dbj|AV596957.1|), blast E-value=9e-35, identity=86.75% 
               

               
               167-282, AV596958 Bos taurus cartilage fetus Bos taurus cDNA clone 
(dbj|AV596958.1|), blast E-value=7e-20, identity=86.21% 
               

               
               180-284, BX119194 Soares melanocyte 2NbHM Homo sapiens cDNA clone 
(emb|BX119194.1|), blast E-value=2e-17, identity=86.67% 
               

               
               180-284, xi84a04.x1 NCI_CGAP_Mel3 Homo sapiens cDNA clone IMAGE 
(gb|AW168445.1|), blast E-value=2e-17, identity=86.67% 
               

               
               180-284, UI-H-BI4-apc-d-07-0-UI.s1 NCI_CGAP_Sub8 Homo sapiens cDNA clone 
(gb|BF509846.1|), blast E-value=2e-17, identity=86.67% 
               

               
               203-399, 000924BEMN018872HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY211560.1|), blast E-value=9e-32, identity=84.26%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               167-332, AV596957 Bos taurus cartilage fetus Bos taurus cDNA clone 
(dbj|AV596957.1|), blast E-value=9e-35, identity=86.75% 
               

               
               167-282, AV596958 Bos taurus cartilage fetus Bos taurus cDNA clone 
(dbj|AV596958.1|), blast E-value=7e-20, identity=86.21% 
               

               
               180-284, BX119194 Soares melanocyte 2NbHM Homo sapiens cDNA clone 
(emb|BX119194.1|), blast E-value=2e-17, identity=86.67% 
               

               
               180-284, xi84a04.x1 NCI_CGAP_Mel3 Homo sapiens cDNA clone IMAGE 
(gb|AW168445.1|), blast E-value=2e-17, identity=86.67% 
               

               
               180-284, UI-H-BI4-apc-d-07-0-UI.s1 NCI_CGAP_Sub8 Homo sapiens cDNA clone 
(gb|BF509846.1|), blast E-value=2e-17, identity=86.67% 
               

               
               203-399, 000924BEMN018872HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY211560.1|), blast E-value=9e-32, identity=84.26%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-552, gnl|bosTau2|chr3 (11011370-11010823)
               

               
               5-552, gnl|Hg17|chr1 (153455628-153455111)
               

               
               5-552, gnl|Mm7|chr3 (88089643-88090133)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-552, gnl|bosTau2|chr3 (11011370-11010823)
               

               
               5-552, gnl|Hg17|chr1 (153455628-153455111)
               

               
               5-552, gnl|Mm7|chr3 (88089643-88090133)

	167-332, AV596957 Bos taurus cartilage fetus Bos taurus cDNA clone (dbj\|AV596957.1\|), blast E-value=9e-35, identity=86.75%
	167-282, AV596958 Bos taurus cartilage fetus Bos taurus cDNA clone (dbj\|AV596958.1\|), blast E-value=7e-20, identity=86.21%
	180-284, BX119194 Soares melanocyte 2NbHM Homo sapiens cDNA clone (emb\|BX119194.1\|), blast E-value=2e-17, identity=86.67%
	180-284, xi84a04.x1 NCI_CGAP_Mel3 Homo sapiens cDNA clone IMAGE (gb\|AW168445.1\|), blast E-value=2e-17, identity=86.67%
	180-284, UI-H-BI4-apc-d-07-0-UI.s1 NCI_CGAP_Sub8 Homo sapiens cDNA clone (gb\|BF509846.1\|), blast E-value=2e-17, identity=86.67%
	203-399, 000924BEMN018872HT BEMN Bos taurus cDNA, mRNA sequence (gb\|DY211560.1\|), blast E-value=9e-32, identity=84.26%

	5-552, gnl\|bosTau2\|chr3 (11011370-11010823)
	5-552, gnl\|Hg17\|chr1 (153455628-153455111)
	5-552, gnl\|Mm7\|chr3 (88089643-88090133)