Non-Coding RNA Search

Ss1.1-Pig4-TMW8051F15.5

Sequence:


               
               TATGTCACATGCAGGTGTGTGGACTGCTGCTTTTTTATAGTCCCAAAGATTGCAGTCAGG
ATTACAAGGACTTTAATCTTGCTCAGTTTCCTTCACTGGGGTGGTGTAAAGAGACGTGAA
CTTCTCTTTCAGATTGACCTGACTCTCCTCATTTTCTTCCACCTCAGAACATCCAGCCCC
TCTTAGAACTTGACCAAAATAGAAGCAAACTAAAGTTGTACATTGGACACCTGACGGCCC
TCTGCCATGACCGAGACCCCCTGATCCTTCGAGGACTCACTCCACCAGCTTCCTACAACT
TGGACGATGACCAGGCAGCGTGGGAGAATGAGCTACAAAAGATGACCCAGGAGCAGGTAA
GTCTCACCTGAGCTTTGACAACACCCTCTCAAAGTTCGGCTGCTGTCTGGTTGATGCAAT
AGAAGCTACCTTGGAAAATATTCTGTGTTCAGGTTCAAGAGTCTTAGCAGTGGTTGGTAG
TTGGTTCTTCCACAGTTATAGGAGTTACCATTTGAAATAAGTTCCACTTTATTCTTCCCT
CCGTGTAACTTGCTGAAGAATCAGAAAAGGCTGGTTTAGAAGGGAGAGGGTTAAAGAGAA
TCTGTTATTGTCCCATATGTTATTTTGCAGAGGTGATGGCCACTAATAACTGTGGCTGCA
GAAGGACCGTCTGAGTTAGGCGCATTTGGATGAGGCTCCTTGACAAGTCAGTAGCTCCAG
TATCTTCAGTTGTCTCTGGGGAACTGTGGTCACAACCTACTAAGTTTTTTAATAGAAGAG
CCATTAGAGAAATTGGTTTAGGTTACCCACCTAGGCTACATTTTCTGTTTACTGTTGCCT
GTAAAACCCAGTGGTTCTCTTTTTTTTCATATTTTTAGTTCAGTAGATAAATGAGAAGGC
TGGTCTGAAGACAAAAACCATGAATAAAAGAAACAAGATAAGCACAGAGAGAGCAGATAC
GGAAAGTCAGGGAAAGAAAAATTGAATAAACACTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATGTCACATGCAGGTGTGTGGACTGCTGCTTTTTTATAGTCCCAAAGATTGCAGTCAGG
ATTACAAGGACTTTAATCTTGCTCAGTTTCCTTCACTGGGGTGGTGTAAAGAGACGTGAA
CTTCTCTTTCAGATTGACCTGACTCTCCTCATTTTCTTCCACCTCAGAACATCCAGCCCC
TCTTAGAACTTGACCAAAATAGAAGCAAACTAAAGTTGTACATTGGACACCTGACGGCCC
TCTGCCATGACCGAGACCCCCTGATCCTTCGAGGACTCACTCCACCAGCTTCCTACAACT
TGGACGATGACCAGGCAGCGTGGGAGAATGAGCTACAAAAGATGACCCAGGAGCAGGTAA
GTCTCACCTGAGCTTTGACAACACCCTCTCAAAGTTCGGCTGCTGTCTGGTTGATGCAAT
AGAAGCTACCTTGGAAAATATTCTGTGTTCAGGTTCAAGAGTCTTAGCAGTGGTTGGTAG
TTGGTTCTTCCACAGTTATAGGAGTTACCATTTGAAATAAGTTCCACTTTATTCTTCCCT
CCGTGTAACTTGCTGAAGAATCAGAAAAGGCTGGTTTAGAAGGGAGAGGGTTAAAGAGAA
TCTGTTATTGTCCCATATGTTATTTTGCAGAGGTGATGGCCACTAATAACTGTGGCTGCA
GAAGGACCGTCTGAGTTAGGCGCATTTGGATGAGGCTCCTTGACAAGTCAGTAGCTCCAG
TATCTTCAGTTGTCTCTGGGGAACTGTGGTCACAACCTACTAAGTTTTTTAATAGAAGAG
CCATTAGAGAAATTGGTTTAGGTTACCCACCTAGGCTACATTTTCTGTTTACTGTTGCCT
GTAAAACCCAGTGGTTCTCTTTTTTTTCATATTTTTAGTTCAGTAGATAAATGAGAAGGC
TGGTCTGAAGACAAAAACCATGAATAAAAGAAACAAGATAAGCACAGAGAGAGCAGATAC
GGAAAGTCAGGGAAAGAAAAATTGAATAAACACTGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61860122|ref|XP_617129.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61860122|ref|XP_617129.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               765-867, - strand, RNAz p=0.986109

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               765-867, - strand, RNAz p=0.986109

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               44-588, gnl|bosTau2|chr5 (65307614-65307077)
               

               
               44-588, gnl|Hg17|chr12 (1423824-1425184)
               


               
               726-996, gnl|bosTau2|chr5 (65306723-65306415)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               44-588, gnl|bosTau2|chr5 (65307614-65307077)
               

               
               44-588, gnl|Hg17|chr12 (1423824-1425184)
               


               
               726-996, gnl|bosTau2|chr5 (65306723-65306415)

	44-588, gnl\|bosTau2\|chr5 (65307614-65307077)
	44-588, gnl\|Hg17\|chr12 (1423824-1425184)

	726-996, gnl\|bosTau2\|chr5 (65306723-65306415)