Non-Coding RNA Search

Ss1.1-Pig4-TMW8051G12.3

Sequence:


               
               CCGTGTAGATCCTCGGGGCAAGCCCTGTGAGACAGTGTTCCAGCGACTGAGCTACAATGG
CTGCTCCAGCGTGGTACGCTGCCGGCCACTCACAGGCCGCACGCACCAGATCCGAGTCCA
CCTCCAGTTCCTGGGCCATCCCATCCTCAATGACCCCATCTACAACTCAGTTGCCTGGGG
CCCCTCCCGAGGCCGAGGCGGCCACATTCCAAAGACAGATGAGGAACTACTTCGGGACCT
TGTGGCAGAGCACCAGGCCAAACAGAGCCTGGATGTGCTAGATCTCTGTGAGGGCGACCT
GTCCCCTGGTCTCATAGACTCTACAGCACCCTCCTCAGAGCTGAGCAAGGACCATGTAGA
AGAGTTGGCTGCATCTGCCCAGAAGATGGATGGAGCAGTTGAGGCAGCCCCTCAGGATCT
GGACACAGTGCCCTTGGCACTAGGGAAGGCAGCCAAAATGGATGTTGTGAATCAAGAAAC
AGACCCACTCTGTGCAGAGTGCCGGCTGGTGCGACAGGACCCCTTGCCCCAGGACCTTGT
GATGTTCTTGCATGCTCTCTGCTATAAAGGGCCAGGCTTTGAGTACTTTTCACCAATGCC
TGCCTGGGCTCAGGATGACTGGCAAGAGGGCTGAGGGCTGTGACCAATGGAGGGGTTACT
TCTTGGGTTGGAAGAGGGATAGGCCATGGGTAGTAGGAGCTGACCACATACACTGTACTC
AGTTTCTCAGGGGTGAGGTTGGGCTCTTAAAGGAACTGCTCATACCTCCTTCTTTCTTCT
CCCTCCAGCTACAGTTTGGGGACTTTTTTTGGTTTGTAAATAGATCTCTTTTTTTCTAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGTGTAGATCCTCGGGGCAAGCCCTGTGAGACAGTGTTCCAGCGACTGAGCTACAATGG
CTGCTCCAGCGTGGTACGCTGCCGGCCACTCACAGGCCGCACGCACCAGATCCGAGTCCA
CCTCCAGTTCCTGGGCCATCCCATCCTCAATGACCCCATCTACAACTCAGTTGCCTGGGG
CCCCTCCCGAGGCCGAGGCGGCCACATTCCAAAGACAGATGAGGAACTACTTCGGGACCT
TGTGGCAGAGCACCAGGCCAAACAGAGCCTGGATGTGCTAGATCTCTGTGAGGGCGACCT
GTCCCCTGGTCTCATAGACTCTACAGCACCCTCCTCAGAGCTGAGCAAGGACCATGTAGA
AGAGTTGGCTGCATCTGCCCAGAAGATGGATGGAGCAGTTGAGGCAGCCCCTCAGGATCT
GGACACAGTGCCCTTGGCACTAGGGAAGGCAGCCAAAATGGATGTTGTGAATCAAGAAAC
AGACCCACTCTGTGCAGAGTGCCGGCTGGTGCGACAGGACCCCTTGCCCCAGGACCTTGT
GATGTTCTTGCATGCTCTCTGCTATAAAGGGCCAGGCTTTGAGTACTTTTCACCAATGCC
TGCCTGGGCTCAGGATGACTGGCAAGAGGGCTGAGGGCTGTGACCAATGGAGGGGTTACT
TCTTGGGTTGGAAGAGGGATAGGCCATGGGTAGTAGGAGCTGACCACATACACTGTACTC
AGTTTCTCAGGGGTGAGGTTGGGCTCTTAAAGGAACTGCTCATACCTCCTTCTTTCTTCT
CCCTCCAGCTACAGTTTGGGGACTTTTTTTGGTTTGTAAATAGATCTCTTTTTTTCTAAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1531665|gb|AAB07777.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1531665|gb|AAB07777.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-479, - strand, RNAz p=0.979503
               

               
               520-639, - strand, RNAz p=0.548154

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-479, - strand, RNAz p=0.979503
               

               
               520-639, - strand, RNAz p=0.548154

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-833, gnl|bosTau2|chr10 (27172440-27173271)
               

               
               1-833, gnl|Hg17|chr15 (38653119-38653945)
               

               
               1-833, gnl|Mm7|chr2 (118778990-118779804)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-833, gnl|bosTau2|chr10 (27172440-27173271)
               

               
               1-833, gnl|Hg17|chr15 (38653119-38653945)
               

               
               1-833, gnl|Mm7|chr2 (118778990-118779804)

	40-479, - strand, RNAz p=0.979503
	520-639, - strand, RNAz p=0.548154

	1-833, gnl\|bosTau2\|chr10 (27172440-27173271)
	1-833, gnl\|Hg17\|chr15 (38653119-38653945)
	1-833, gnl\|Mm7\|chr2 (118778990-118779804)