Ss1.1-Pig4-TMW8051H10.3
|
GCAGTCTTGAAATTCTGGAAAAGGAATTTTTTTTTTCTTTTTTTCTTTTTAGGGCTGCAG
------------------------TAGGGGTCTAATTGGAGCTGCAGCTGCCGGGCTATG
CCACAGCCACAGCAACATGGGATCCGAGCTGTGTCTGTAACCTACACCGCAGTTCACAGC
AACGCCGGATCCTTAACTCACTGAGCAAGGCGAGGGATTGAACCCACAACCTCACGGTTC
CTAGTCGGATTCGTTTCTGCTGCGCCACAACAGGAACTCCTGGAAGAGGAATTTTGGAGT
GGACTGTCGGACAGTAGGGAGCCACTTAAGGTTCTAGAGGGGTGTGGGGAGGAGGCAAAC
TGAAAGCCATATGCTGCTTTAGGGAAGGCAGGAGGGGACCTTGTAGGCCCAGGAGTCTGG
CTTTGTTCTCCTAGGCCCTTTGCTAACTCTCTCTGCTAAAGTGTGAAGCTGACATGCCTC
TGGGACTGCCTCCACTCACAGCCTTTGGGAGCCTGAGAGTGATGACAAGGTTCTCGGTGC
AGGGGCTTCATGTCCTGATCTGCTGGGCCTGGGATGTCCCTGCAGCCGCCTCCTCAGGGA
TACCCTGCTTCCTGTCTCTGCAGGGAGAACTTCCTGGTCCTAGATGTCTTTTTTGAAGCC
CTGACCTCTGAGGCCATGGAGCAGCGAGCCGTCTATGGCCTGTCAGCCCTCCTGGGGGAC
CTTGGGGGCCAGATGGGCCTATTCATCGGGGCCAGCATCCTCACGCTGCTGGAGATCCTT
GACTACATCTATGAGGTGTCCTGGGACCGACTGAAGCGGGCGTGGCGTCGTCCCAAGACG
CCCCTCCGGACCTCCACCGGGGGCATCTCCACTCTGGGGCTGCAGGAGCTGAAGGAGCAG
AGTCCCTGCCCA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCAGTCTTGAAATTCTGGAAAAGGAATTTTTTTTTTCTTTTTTTCTTTTTAGGGCTGCAG
------------------------TAGGGGTCTAATTGGAGCTGCAGCTGCCGGGCTATG
CCACAGCCACAGCAACATGGGATCCGAGCTGTGTCTGTAACCTACACCGCAGTTCACAGC
AACGCCGGATCCTTAACTCACTGAGCAAGGCGAGGGATTGAACCCACAACCTCACGGTTC
CTAGTCGGATTCGTTTCTGCTGCGCCACAACAGGAACTCCTGGAAGAGGAATTTTGGAGT
GGACTGTCGGACAGTAGGGAGCCACTTAAGGTTCTAGAGGGGTGTGGGGAGGAGGCAAAC
TGAAAGCCATATGCTGCTTTAGGGAAGGCAGGAGGGGACCTTGTAGGCCCAGGAGTCTGG
CTTTGTTCTCCTAGGCCCTTTGCTAACTCTCTCTGCTAAAGTGTGAAGCTGACATGCCTC
TGGGACTGCCTCCACTCACAGCCTTTGGGAGCCTGAGAGTGATGACAAGGTTCTCGGTGC
AGGGGCTTCATGTCCTGATCTGCTGGGCCTGGGATGTCCCTGCAGCCGCCTCCTCAGGGA
TACCCTGCTTCCTGTCTCTGCAGGGAGAACTTCCTGGTCCTAGATGTCTTTTTTGAAGCC
CTGACCTCTGAGGCCATGGAGCAGCGAGCCGTCTATGGCCTGTCAGCCCTCCTGGGGGAC
CTTGGGGGCCAGATGGGCCTATTCATCGGGGCCAGCATCCTCACGCTGCTGGAGATCCTT
GACTACATCTATGAGGTGTCCTGGGACCGACTGAAGCGGGCGTGGCGTCGTCCCAAGACG
CCCCTCCGGACCTCCACCGGGGGCATCTCCACTCTGGGGCTGCAGGAGCTGAAGGAGCAG
AGTCCCTGCCCA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
304-701, gnl|bosTau2|chr2 (68784475-68784071) |
|
304-701, gnl|Hg17|chr2 (220226988-220227394) |
| |
|
770-876, gnl|bosTau2|chr2 (68783611-68783505) |
|
770-876, gnl|canFam2|chr37 (29046979-29047126) |
|
770-876, gnl|dasNov1|scaffold_47634 (4070-4206) |
|
770-876, gnl|echTel1|scaffold_294913 (2272-2422) |
|
770-876, gnl|fr1|chrUn (279298828-279298951) |
|
770-876, gnl|galGal2|chr7 (22914777-22914620) |
|
770-876, gnl|hg17|chr2 (220227804-220227955) |
|
770-876, gnl|Hg17|chr2 (220227857-220227963) |
|
770-876, gnl|mm7|chr1 (75699409-75699533) |
|
770-876, gnl|Mm7|chr1 (75699435-75699541) |
|
770-876, gnl|monDom2|scaffold_864 (12866-12724) |
|
770-876, gnl|panTro1|chr13 (110392905-110393056) |
|
770-876, gnl|rheMac2|chr12 (83385580-83385730) |
|
770-876, gnl|rn3|chr9 (74895640-74895764) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
304-701, gnl|bosTau2|chr2 (68784475-68784071) |
|
304-701, gnl|Hg17|chr2 (220226988-220227394) |
| |
|
770-876, gnl|bosTau2|chr2 (68783611-68783505) |
|
770-876, gnl|canFam2|chr37 (29046979-29047126) |
|
770-876, gnl|dasNov1|scaffold_47634 (4070-4206) |
|
770-876, gnl|echTel1|scaffold_294913 (2272-2422) |
|
770-876, gnl|fr1|chrUn (279298828-279298951) |
|
770-876, gnl|galGal2|chr7 (22914777-22914620) |
|
770-876, gnl|hg17|chr2 (220227804-220227955) |
|
770-876, gnl|Hg17|chr2 (220227857-220227963) |
|
770-876, gnl|mm7|chr1 (75699409-75699533) |
|
770-876, gnl|Mm7|chr1 (75699435-75699541) |
|
770-876, gnl|monDom2|scaffold_864 (12866-12724) |
|
770-876, gnl|panTro1|chr13 (110392905-110393056) |
|
770-876, gnl|rheMac2|chr12 (83385580-83385730) |
|
770-876, gnl|rn3|chr9 (74895640-74895764) |
