Non-Coding RNA Search

Ss1.1-Pig4-TMW8051J16.5

Sequence:


               
               CTGAGGCGGGATCCGGGCGAACCGAGTGAAGACCTGGTCCTGTAGACGGGAAGGAGCCTG
GACACAGTGACCCATTCTCAAAGGCCCTGCAGGACCGCCATGGCTTATGATGACTCCGTG
AAGAAAGAAGACTGCTTTGATGGTGACCACAGCTTTGAGGACATAGGGCTAGCTGCTGGC
CGAAGCCAACGAGAAAAGAAACGTTCTTACAAAGATTTTTTAAGGGAAGAGGAAGAAATC
GCTGCTCAGGTCAGGAATTCTTCCAAGAAGAAGTTAAAGGATAGTGAACTTTACTTCTTG
GGGACGGACACGCACAAGAAGAAGAGGAAGCACTCCTCCGATGATTTCTACTATGGAGGA
CAGTGGTTCTTGTTCTGAGTGCCGATAAACCAGTGTGAAGGAGGAGAGAGGTGGAGGGCT
GGTATTTTGGAGGATTCAGCATAGAAGAACAGTCTTCATTTGTGATACACCAGATATTTC
GTCTTTGGAGTCGTCACAGAAGAAAAAGAAAAAGTCTAGCCCTCAGTCTGCTGATACAGC
AATGGACCTGCTGAAAGCGATCACTTCGCCTCTGGCAACAAGCACCAAGCCCTCCAAAAA
GACGGGAGGAAAGTCGTCTAGTTCCTCAAGCCATTCGGAGAGTAAAAAGGAACACCACAG
GAAGAAAGTAAGCGGAGGCAGTGGGGACCTGTCTCTGGAGGACGGGGGTTCCCACAGATC
CAAAAAAATGAAGCCGCTCTATGTGAACACAGAGACACTGACCCTTCGTGAGCCCGATGG
GTTGAAGATGAAACTTATTCTCTCACCAAAGGAGAAGGGAAGCAGCTCGCTTGACGAGGA
GTCTTTTCAGTACCCCTCTCAACAGGCGACTGTGAAAAAATCCTCTAAGAAGTCAGCTCG
GGATGAGCAAGGTGCTTTACTCCTAGGACATGAATTACAGAGCTTTCTAAAAACGGCCCG
GAAGAAGCACAGATCCTCCTCAGACCCACGCTCGTCTCCTGGCCCTGAAGGCTGTGGGCC
CGATGCCTCCCAATTCCCAGAATCCCACAGTGCTAACCTTGATCTTTCGGGGCTCGAACC
TATTCTGGTAGAATCCGACTCCTCCTCTGGTGGGGAGCTAGAGGCGGGGGAGCTGGTGAT
CGATGATTCCTACCGGGAAATCAAGAAGAAGAAGAAGTCGAAGAAGAGCAAAAAGAAGAA
GGACAAGGAGAAGCATAAAGAGAAGCGACACTCCAAGTCTAAGAGGAGTTCAGGGCTCCC
CGCCACGGCAGTGGGAGAGGTCCCAGCGCCCCCTGCCCCCCCTCCCAGCCTCCCTTACAC
TGGGGCAGCCGCCCCTCCCCTGCCACTTCCTGGCCTCCAGGCAGATGGACCCAGTGAGAA
AAAAAAGAAAAGAGAGGAGAAGGACAAAGACAGAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGAGGCGGGATCCGGGCGAACCGAGTGAAGACCTGGTCCTGTAGACGGGAAGGAGCCTG
GACACAGTGACCCATTCTCAAAGGCCCTGCAGGACCGCCATGGCTTATGATGACTCCGTG
AAGAAAGAAGACTGCTTTGATGGTGACCACAGCTTTGAGGACATAGGGCTAGCTGCTGGC
CGAAGCCAACGAGAAAAGAAACGTTCTTACAAAGATTTTTTAAGGGAAGAGGAAGAAATC
GCTGCTCAGGTCAGGAATTCTTCCAAGAAGAAGTTAAAGGATAGTGAACTTTACTTCTTG
GGGACGGACACGCACAAGAAGAAGAGGAAGCACTCCTCCGATGATTTCTACTATGGAGGA
CAGTGGTTCTTGTTCTGAGTGCCGATAAACCAGTGTGAAGGAGGAGAGAGGTGGAGGGCT
GGTATTTTGGAGGATTCAGCATAGAAGAACAGTCTTCATTTGTGATACACCAGATATTTC
GTCTTTGGAGTCGTCACAGAAGAAAAAGAAAAAGTCTAGCCCTCAGTCTGCTGATACAGC
AATGGACCTGCTGAAAGCGATCACTTCGCCTCTGGCAACAAGCACCAAGCCCTCCAAAAA
GACGGGAGGAAAGTCGTCTAGTTCCTCAAGCCATTCGGAGAGTAAAAAGGAACACCACAG
GAAGAAAGTAAGCGGAGGCAGTGGGGACCTGTCTCTGGAGGACGGGGGTTCCCACAGATC
CAAAAAAATGAAGCCGCTCTATGTGAACACAGAGACACTGACCCTTCGTGAGCCCGATGG
GTTGAAGATGAAACTTATTCTCTCACCAAAGGAGAAGGGAAGCAGCTCGCTTGACGAGGA
GTCTTTTCAGTACCCCTCTCAACAGGCGACTGTGAAAAAATCCTCTAAGAAGTCAGCTCG
GGATGAGCAAGGTGCTTTACTCCTAGGACATGAATTACAGAGCTTTCTAAAAACGGCCCG
GAAGAAGCACAGATCCTCCTCAGACCCACGCTCGTCTCCTGGCCCTGAAGGCTGTGGGCC
CGATGCCTCCCAATTCCCAGAATCCCACAGTGCTAACCTTGATCTTTCGGGGCTCGAACC
TATTCTGGTAGAATCCGACTCCTCCTCTGGTGGGGAGCTAGAGGCGGGGGAGCTGGTGAT
CGATGATTCCTACCGGGAAATCAAGAAGAAGAAGAAGTCGAAGAAGAGCAAAAAGAAGAA
GGACAAGGAGAAGCATAAAGAGAAGCGACACTCCAAGTCTAAGAGGAGTTCAGGGCTCCC
CGCCACGGCAGTGGGAGAGGTCCCAGCGCCCCCTGCCCCCCCTCCCAGCCTCCCTTACAC
TGGGGCAGCCGCCCCTCCCCTGCCACTTCCTGGCCTCCAGGCAGATGGACCCAGTGAGAA
AAAAAAGAAAAGAGAGGAGAAGGACAAAGACAGAGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6PJC1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6PJC1_HUMAN

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               163-280, - strand, RNAz p=0.991995
               

               
               591-790, - strand, RNAz p=0.847956
               

               
               1071-1190, + strand, RNAz p=0.970091

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               163-280, - strand, RNAz p=0.991995
               

               
               591-790, - strand, RNAz p=0.847956
               

               
               1071-1190, + strand, RNAz p=0.970091

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               129-280, gnl|bosTau2|chr5 (43696598-43696447)
               

               
               129-280, gnl|Hg17|chr22 (33983623-33983774)
               

               
               129-280, gnl|Mm7|chr8 (73541479-73541630)
               


               
               472-1416, gnl|bosTau2|chr5 (43695329-43694382)
               

               
               472-1416, gnl|Hg17|chr22 (33985193-33986137)
               

               
               472-1416, gnl|Mm7|chr8 (73542569-73543492)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               129-280, gnl|bosTau2|chr5 (43696598-43696447)
               

               
               129-280, gnl|Hg17|chr22 (33983623-33983774)
               

               
               129-280, gnl|Mm7|chr8 (73541479-73541630)
               


               
               472-1416, gnl|bosTau2|chr5 (43695329-43694382)
               

               
               472-1416, gnl|Hg17|chr22 (33985193-33986137)
               

               
               472-1416, gnl|Mm7|chr8 (73542569-73543492)

	163-280, - strand, RNAz p=0.991995
	591-790, - strand, RNAz p=0.847956
	1071-1190, + strand, RNAz p=0.970091

	129-280, gnl\|bosTau2\|chr5 (43696598-43696447)
	129-280, gnl\|Hg17\|chr22 (33983623-33983774)
	129-280, gnl\|Mm7\|chr8 (73541479-73541630)

	472-1416, gnl\|bosTau2\|chr5 (43695329-43694382)
	472-1416, gnl\|Hg17\|chr22 (33985193-33986137)
	472-1416, gnl\|Mm7\|chr8 (73542569-73543492)