Non-Coding RNA Search

Ss1.1-Pig4-TMW8051M20.3

Sequence:


               
               AAGGAAGTGGTGTGCAAAAAGAAAACAAAATTAAAAATGTAATTATGTCTTTAATGTAAT
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------GGAATTATTTGA
TTTTATATGTGGTTTGTGAGCTATCTTGTACCAAAACATTAATGGTTGGCAGGTAACTTG
TGACACAGATAGTAACTGGTACAGGTCTCAGAAGCCTTTTCATTTTAGTTCCTTTCCACA
CTCCATTCTTATCTTTATTTTTTGTCTCCTTTTTTCTTTTTTCCCCCACTCTCAACATGT
GCTACTGTTCCAATTGATTGTTACTCTGTTTCTTAAATTCGCTAGTGGTTCTCAGTGGTA
ACATTGGCTTCAGTACAAATAAAGGAGTGTTGGTCCCTGATGTACTGTACACTTCTGTGT
AACGTGGATATTTAAGTATATTTCACTGTAGAAATACTTAAATCTTCTCAGCCTGCCTAC
AGATTTGGAAATAGCACTCTCTAAGGCATAATATTGGTGAAGTTGAGCAGGGCTTCACCA
GAAAAGAGCTGTTCACACAATTAGGGAGTTGAGGAAAAGAACAGAAGGGGGAAGGGGAAC
CAGTCCTCTTCTTTGTAGAATTAACCATGGAAGATGATTCCAGAGCAAGAAAAGAGCAGC
TGCAATTATAAGGCAGCTGTGATGGACTCAGGTTGCAGTGGAAGGCTCTTTGTTTAAGGA
CTCCTTCATTTCTGGAGAATTGAAGCTCAATGGACTGTGTTCCCTGAGCCTCTGCTCCTG
TATTCCATGGATTGCCTAGCCACTGAATTTAGGTAGACCTTCACTGGAGGAATAGCCACT
ATCTAGTCTTTGTATTTTACGAACATAATATAATTTAATATAGAGAGTAGAGATTTCAGA
CAAGATACTAGAAAACAATTATTACAAAATTGGAGAAGTATCACTGTTCAGAAGCTACAG
ATAGAAAGAAAATGGACCCAAGTTTTGCCTGTTTCTTATTTTTAATCCTCTTTCATTGAA
AAGCCTTTTTGCCATGTACTTTACTTTTCATTGAAAATTTTTCAAATTGGCTTTGTGAAT
TGATAATTTAATTTATTTTACCAGGTGGGCATTGAATCTAAAATACAGTTTAAAAACAAA
CAAGAATTACAGTTTTTTGATGACGAGGATGAAACTGGAGAGAGCCACACCATCTTCATG
GGCCCCGTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGAAGTGGTGTGCAAAAAGAAAACAAAATTAAAAATGTAATTATGTCTTTAATGTAAT
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------GGAATTATTTGA
TTTTATATGTGGTTTGTGAGCTATCTTGTACCAAAACATTAATGGTTGGCAGGTAACTTG
TGACACAGATAGTAACTGGTACAGGTCTCAGAAGCCTTTTCATTTTAGTTCCTTTCCACA
CTCCATTCTTATCTTTATTTTTTGTCTCCTTTTTTCTTTTTTCCCCCACTCTCAACATGT
GCTACTGTTCCAATTGATTGTTACTCTGTTTCTTAAATTCGCTAGTGGTTCTCAGTGGTA
ACATTGGCTTCAGTACAAATAAAGGAGTGTTGGTCCCTGATGTACTGTACACTTCTGTGT
AACGTGGATATTTAAGTATATTTCACTGTAGAAATACTTAAATCTTCTCAGCCTGCCTAC
AGATTTGGAAATAGCACTCTCTAAGGCATAATATTGGTGAAGTTGAGCAGGGCTTCACCA
GAAAAGAGCTGTTCACACAATTAGGGAGTTGAGGAAAAGAACAGAAGGGGGAAGGGGAAC
CAGTCCTCTTCTTTGTAGAATTAACCATGGAAGATGATTCCAGAGCAAGAAAAGAGCAGC
TGCAATTATAAGGCAGCTGTGATGGACTCAGGTTGCAGTGGAAGGCTCTTTGTTTAAGGA
CTCCTTCATTTCTGGAGAATTGAAGCTCAATGGACTGTGTTCCCTGAGCCTCTGCTCCTG
TATTCCATGGATTGCCTAGCCACTGAATTTAGGTAGACCTTCACTGGAGGAATAGCCACT
ATCTAGTCTTTGTATTTTACGAACATAATATAATTTAATATAGAGAGTAGAGATTTCAGA
CAAGATACTAGAAAACAATTATTACAAAATTGGAGAAGTATCACTGTTCAGAAGCTACAG
ATAGAAAGAAAATGGACCCAAGTTTTGCCTGTTTCTTATTTTTAATCCTCTTTCATTGAA
AAGCCTTTTTGCCATGTACTTTACTTTTCATTGAAAATTTTTCAAATTGGCTTTGTGAAT
TGATAATTTAATTTATTTTACCAGGTGGGCATTGAATCTAAAATACAGTTTAAAAACAAA
CAAGAATTACAGTTTTTTGATGACGAGGATGAAACTGGAGAGAGCCACACCATCTTCATG
GGCCCCGTAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               601-1021, - strand, RNAz p=0.999987

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               601-1021, - strand, RNAz p=0.999987

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               62-231, gnl|bosTau2|chr9 (5859695-5859858)
               

               
               62-231, gnl|Hg17|chr6 (76443807-76443954)
               


               
               251-378, gnl|bosTau2|chr9 (5859926-5860053)
               


               
               401-1164, gnl|bosTau2|chr9 (5860292-5861052)
               

               
               401-1164, gnl|Hg17|chr6 (76444325-76445126)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               62-231, gnl|bosTau2|chr9 (5859695-5859858)
               

               
               62-231, gnl|Hg17|chr6 (76443807-76443954)
               


               
               251-378, gnl|bosTau2|chr9 (5859926-5860053)
               


               
               401-1164, gnl|bosTau2|chr9 (5860292-5861052)
               

               
               401-1164, gnl|Hg17|chr6 (76444325-76445126)

	62-231, gnl\|bosTau2\|chr9 (5859695-5859858)
	62-231, gnl\|Hg17\|chr6 (76443807-76443954)

	251-378, gnl\|bosTau2\|chr9 (5859926-5860053)

	401-1164, gnl\|bosTau2\|chr9 (5860292-5861052)
	401-1164, gnl\|Hg17\|chr6 (76444325-76445126)