Non-Coding RNA Search

Ss1.1-Pig4-TMW8052B07.3

Sequence:


               
               AATAAATAGAGCAGGTAGAATTATTCTTTTGAAGTTATCAGGAAATCCTGAAATTGCATA
CTTTCTAGTATCTCTACTCAGTTACTTTTGATGATTCAAGTGTATAATCCTAACAACTTA
GAATATGTCATTTCTTAATACTATACCTTATTATTTTCTCCTCCTAAATATCTTACTAGG
TATATGTGGTTGCTATGAATATTAAAAAGGAAGCTGACTCAAAGCCAAAAAGAGCAAATA
AAAACACTGATGATGATGATGATGATTATAGTACCAGTGTCTGTGACCCCCCGGATAGTT
TAATAACACTTGTACAACCTGAACGTCGGGGATCCAGCCTGCTTCCTTATGGATACTAGT
TGGATTCGTTTTCCATGTGCCACAACAGGAACTCCCATAAATGACTTTAAATATCTTCTT
AATCAACCTGATAACCTTGGGAACCCCCCCCACCCTCCCCTCTGATGTGATTATGAACCT
AATTGTAAAGCTATAATCTGTGTTAAGTTGGGCTACTAATTTTGAAAATCATTTTGAACT
CACTTTAAGGCATTACTAAATATATGTTAAAATAACCTGTAAAAAATAATTATATAAGAA
TAGAAAAAATGGTATCAAAACAGCAAAGTATTTAATATTAATAAACCTGTATTTTTATTT
TGTACATTGCAGGTGTGAGTATACAATTCCTTTGTTCCCCAAGACCTGAGGAGCCTGTTG
AACATGTTACGGCATGTCTGCAGGCTTTGCACACCTTGCTAGATTCTCCTTATGCCCGAA
TCCATATTGCAGAAGATCAGGTACAGTGTATTTCTATAATGGATAATTAATTTATGCTTT
GTCGACTCAGGTCACTGAGGAGGCTTGGGTTTGATCCTTGGCCCCACATGGTGAATTAAA
GGATCCAGCATTGCCACAGGTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATAAATAGAGCAGGTAGAATTATTCTTTTGAAGTTATCAGGAAATCCTGAAATTGCATA
CTTTCTAGTATCTCTACTCAGTTACTTTTGATGATTCAAGTGTATAATCCTAACAACTTA
GAATATGTCATTTCTTAATACTATACCTTATTATTTTCTCCTCCTAAATATCTTACTAGG
TATATGTGGTTGCTATGAATATTAAAAAGGAAGCTGACTCAAAGCCAAAAAGAGCAAATA
AAAACACTGATGATGATGATGATGATTATAGTACCAGTGTCTGTGACCCCCCGGATAGTT
TAATAACACTTGTACAACCTGAACGTCGGGGATCCAGCCTGCTTCCTTATGGATACTAGT
TGGATTCGTTTTCCATGTGCCACAACAGGAACTCCCATAAATGACTTTAAATATCTTCTT
AATCAACCTGATAACCTTGGGAACCCCCCCCACCCTCCCCTCTGATGTGATTATGAACCT
AATTGTAAAGCTATAATCTGTGTTAAGTTGGGCTACTAATTTTGAAAATCATTTTGAACT
CACTTTAAGGCATTACTAAATATATGTTAAAATAACCTGTAAAAAATAATTATATAAGAA
TAGAAAAAATGGTATCAAAACAGCAAAGTATTTAATATTAATAAACCTGTATTTTTATTT
TGTACATTGCAGGTGTGAGTATACAATTCCTTTGTTCCCCAAGACCTGAGGAGCCTGTTG
AACATGTTACGGCATGTCTGCAGGCTTTGCACACCTTGCTAGATTCTCCTTATGCCCGAA
TCCATATTGCAGAAGATCAGGTACAGTGTATTTCTATAATGGATAATTAATTTATGCTTT
GTCGACTCAGGTCACTGAGGAGGCTTGGGTTTGATCCTTGGCCCCACATGGTGAATTAAA
GGATCCAGCATTGCCACAGGTGCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               665-784, - strand, RNAz p=0.630738

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               665-784, - strand, RNAz p=0.630738

Aligned organism(s): 21 entry(ies)

More info

Aligned organism(s): 21 entry(ies)

Help | Less info


               
               102-324, gnl|bosTau2|chr11 (15116672-15116450)
               

               
               102-324, gnl|canFam2|chr17 (32504113-32504383)
               

               
               102-324, gnl|danRer3|chrNA (101694939-101695206)
               

               
               102-324, gnl|dasNov1|scaffold_819 (62731-63001)
               

               
               102-324, gnl|echTel1|scaffold_287385 (47685-47955)
               

               
               102-324, gnl|fr1|chrUn (15206124-15206377)
               

               
               102-324, gnl|galGal2|chr3 (28355974-28355697)
               

               
               102-324, gnl|hg17|chr2 (37147377-37147647)
               

               
               102-324, gnl|Hg17|chr2 (37147720-37147498)
               

               
               102-324, gnl|loxAfr1|scaffold_8284 (4812-4542)
               

               
               102-324, gnl|mm7|chr17 (77068892-77069162)
               

               
               102-324, gnl|Mm7|chr17 (77069230-77069013)
               

               
               102-324, gnl|monDom2|scaffold_1 (134945152-134944882)
               

               
               102-324, gnl|oryCun1|scaffold_175748 (4409-4679)
               

               
               102-324, gnl|panTro1|chr12 (38599035-38599305)
               

               
               102-324, gnl|rheMac2|chr13 (36990830-36991100)
               

               
               102-324, gnl|rn3|chr6 (1554817-1555085)
               

               
               102-324, gnl|tetNig1|chr17 (2142875-2142629)
               

               
               102-324, gnl|xenTro1|scaffold_581 (50142-49867)
               


               
               398-831, gnl|bosTau2|chr11 (15113192-15112766)
               

               
               398-831, gnl|Hg17|chr2 (37144837-37144401)

Aligned organism(s): 21 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               102-324, gnl|bosTau2|chr11 (15116672-15116450)
               

               
               102-324, gnl|canFam2|chr17 (32504113-32504383)
               

               
               102-324, gnl|danRer3|chrNA (101694939-101695206)
               

               
               102-324, gnl|dasNov1|scaffold_819 (62731-63001)
               

               
               102-324, gnl|echTel1|scaffold_287385 (47685-47955)
               

               
               102-324, gnl|fr1|chrUn (15206124-15206377)
               

               
               102-324, gnl|galGal2|chr3 (28355974-28355697)
               

               
               102-324, gnl|hg17|chr2 (37147377-37147647)
               

               
               102-324, gnl|Hg17|chr2 (37147720-37147498)
               

               
               102-324, gnl|loxAfr1|scaffold_8284 (4812-4542)
               

               
               102-324, gnl|mm7|chr17 (77068892-77069162)
               

               
               102-324, gnl|Mm7|chr17 (77069230-77069013)
               

               
               102-324, gnl|monDom2|scaffold_1 (134945152-134944882)
               

               
               102-324, gnl|oryCun1|scaffold_175748 (4409-4679)
               

               
               102-324, gnl|panTro1|chr12 (38599035-38599305)
               

               
               102-324, gnl|rheMac2|chr13 (36990830-36991100)
               

               
               102-324, gnl|rn3|chr6 (1554817-1555085)
               

               
               102-324, gnl|tetNig1|chr17 (2142875-2142629)
               

               
               102-324, gnl|xenTro1|scaffold_581 (50142-49867)
               


               
               398-831, gnl|bosTau2|chr11 (15113192-15112766)
               

               
               398-831, gnl|Hg17|chr2 (37144837-37144401)

	102-324, gnl\|bosTau2\|chr11 (15116672-15116450)
	102-324, gnl\|canFam2\|chr17 (32504113-32504383)
	102-324, gnl\|danRer3\|chrNA (101694939-101695206)
	102-324, gnl\|dasNov1\|scaffold_819 (62731-63001)
	102-324, gnl\|echTel1\|scaffold_287385 (47685-47955)
	102-324, gnl\|fr1\|chrUn (15206124-15206377)
	102-324, gnl\|galGal2\|chr3 (28355974-28355697)
	102-324, gnl\|hg17\|chr2 (37147377-37147647)
	102-324, gnl\|Hg17\|chr2 (37147720-37147498)
	102-324, gnl\|loxAfr1\|scaffold_8284 (4812-4542)
	102-324, gnl\|mm7\|chr17 (77068892-77069162)
	102-324, gnl\|Mm7\|chr17 (77069230-77069013)
	102-324, gnl\|monDom2\|scaffold_1 (134945152-134944882)
	102-324, gnl\|oryCun1\|scaffold_175748 (4409-4679)
	102-324, gnl\|panTro1\|chr12 (38599035-38599305)
	102-324, gnl\|rheMac2\|chr13 (36990830-36991100)
	102-324, gnl\|rn3\|chr6 (1554817-1555085)
	102-324, gnl\|tetNig1\|chr17 (2142875-2142629)
	102-324, gnl\|xenTro1\|scaffold_581 (50142-49867)

	398-831, gnl\|bosTau2\|chr11 (15113192-15112766)
	398-831, gnl\|Hg17\|chr2 (37144837-37144401)